Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0105 and Psest_0106 overlap by 4 nucleotides Psest_0106 and Psest_0107 are separated by 72 nucleotides Psest_0107 and Psest_0108 overlap by 4 nucleotides
Psest_0105: Psest_0105 - malonate decarboxylase, beta subunit, at 104,190 to 105,056
_0105
Psest_0106: Psest_0106 - malonate decarboxylase, gamma subunit, at 105,053 to 105,838
_0106
Psest_0107: Psest_0107 - malonate decarboxylase holo-[acyl-carrier-protein] synthase, at 105,911 to 106,528
_0107
Psest_0108: Psest_0108 - malonate decarboxylase, epsilon subunit, at 106,525 to 107,451
_0108
Position (kb) 105
106
107 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 105.155 kb on - strand, within Psest_0106 at 105.164 kb on + strand, within Psest_0106 at 105.164 kb on + strand, within Psest_0106 at 105.164 kb on + strand, within Psest_0106 at 105.165 kb on - strand, within Psest_0106 at 105.165 kb on - strand, within Psest_0106 at 105.325 kb on - strand, within Psest_0106 at 105.339 kb on - strand, within Psest_0106 at 105.621 kb on - strand, within Psest_0106 at 105.635 kb on + strand, within Psest_0106 at 105.635 kb on + strand, within Psest_0106 at 105.636 kb on - strand, within Psest_0106 at 105.636 kb on - strand, within Psest_0106 at 105.636 kb on - strand, within Psest_0106 at 105.636 kb on - strand, within Psest_0106 at 105.636 kb on - strand, within Psest_0106 at 105.908 kb on + strand at 105.908 kb on + strand at 105.908 kb on + strand at 105.909 kb on - strand at 105.909 kb on - strand at 105.909 kb on - strand at 105.909 kb on - strand at 106.230 kb on - strand, within Psest_0107 at 106.765 kb on + strand, within Psest_0108 at 106.765 kb on + strand, within Psest_0108 at 106.765 kb on + strand, within Psest_0108 at 106.765 kb on + strand, within Psest_0108 at 106.765 kb on + strand, within Psest_0108 at 106.765 kb on + strand, within Psest_0108 at 106.765 kb on + strand, within Psest_0108 at 106.765 kb on + strand, within Psest_0108 at 106.766 kb on - strand, within Psest_0108 at 106.766 kb on - strand, within Psest_0108 at 106.766 kb on - strand, within Psest_0108 at 106.766 kb on - strand, within Psest_0108 at 106.766 kb on - strand, within Psest_0108 at 106.792 kb on + strand, within Psest_0108 at 106.792 kb on + strand, within Psest_0108 at 106.792 kb on + strand, within Psest_0108 at 106.826 kb on - strand, within Psest_0108 at 106.826 kb on - strand, within Psest_0108 at 106.826 kb on - strand, within Psest_0108 at 106.879 kb on + strand, within Psest_0108 at 106.966 kb on + strand, within Psest_0108 at 106.977 kb on + strand, within Psest_0108 at 106.977 kb on + strand, within Psest_0108 at 107.180 kb on - strand, within Psest_0108 at 107.309 kb on + strand, within Psest_0108 at 107.373 kb on + strand at 107.449 kb on + strand at 107.514 kb on + strand at 107.514 kb on + strand at 107.514 kb on + strand at 107.514 kb on + strand at 107.515 kb on - strand at 107.515 kb on - strand at 107.515 kb on - strand at 107.515 kb on - strand at 107.515 kb on - strand at 107.515 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 105,155 - Psest_0106 0.13 -0.4 105,164 + Psest_0106 0.14 +2.8 105,164 + Psest_0106 0.14 +2.4 105,164 + Psest_0106 0.14 +2.0 105,165 - Psest_0106 0.14 +0.0 105,165 - Psest_0106 0.14 -0.4 105,325 - Psest_0106 0.35 -0.2 105,339 - Psest_0106 0.36 -0.2 105,621 - Psest_0106 0.72 +0.5 105,635 + Psest_0106 0.74 +2.9 105,635 + Psest_0106 0.74 +2.1 105,636 - Psest_0106 0.74 -1.3 105,636 - Psest_0106 0.74 +1.6 105,636 - Psest_0106 0.74 -0.3 105,636 - Psest_0106 0.74 +0.2 105,636 - Psest_0106 0.74 -1.0 105,908 + +1.2 105,908 + -0.4 105,908 + -0.3 105,909 - -1.6 105,909 - -0.8 105,909 - +0.6 105,909 - +0.1 106,230 - Psest_0107 0.52 -2.0 106,765 + Psest_0108 0.26 +1.7 106,765 + Psest_0108 0.26 +2.8 106,765 + Psest_0108 0.26 +2.3 106,765 + Psest_0108 0.26 +3.0 106,765 + Psest_0108 0.26 +2.5 106,765 + Psest_0108 0.26 +2.3 106,765 + Psest_0108 0.26 +2.6 106,765 + Psest_0108 0.26 +2.5 106,766 - Psest_0108 0.26 -0.9 106,766 - Psest_0108 0.26 +1.1 106,766 - Psest_0108 0.26 +0.6 106,766 - Psest_0108 0.26 +0.5 106,766 - Psest_0108 0.26 +0.1 106,792 + Psest_0108 0.29 -0.3 106,792 + Psest_0108 0.29 +1.9 106,792 + Psest_0108 0.29 +3.1 106,826 - Psest_0108 0.32 -0.8 106,826 - Psest_0108 0.32 -0.6 106,826 - Psest_0108 0.32 +1.0 106,879 + Psest_0108 0.38 +2.5 106,966 + Psest_0108 0.48 +2.2 106,977 + Psest_0108 0.49 +2.9 106,977 + Psest_0108 0.49 +2.8 107,180 - Psest_0108 0.71 -0.4 107,309 + Psest_0108 0.85 +2.7 107,373 + +3.5 107,449 + +1.2 107,514 + +1.3 107,514 + +0.4 107,514 + +0.4 107,514 + +0.9 107,515 - +0.9 107,515 - +0.0 107,515 - -1.7 107,515 - +0.4 107,515 - -0.2 107,515 - -0.3
Or see this region's nucleotide sequence