Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0822 and Psest_0823 overlap by 4 nucleotides Psest_0823 and Psest_0824 overlap by 8 nucleotides Psest_0824 and Psest_0825 overlap by 26 nucleotides Psest_0825 and Psest_0826 are separated by 252 nucleotides Psest_0826 and Psest_0827 are separated by 44 nucleotides
Psest_0822: Psest_0822 - Transcriptional regulators, at 895,441 to 895,899
_0822
Psest_0823: Psest_0823 - Transcriptional regulators, at 895,896 to 896,408
_0823
Psest_0824: Psest_0824 - Transcriptional regulators, at 896,401 to 896,844
_0824
Psest_0825: Psest_0825 - transcriptional regulator, AsnC family, at 896,819 to 897,325
_0825
Psest_0826: Psest_0826 - Cytochrome c, at 897,578 to 898,018
_0826
Psest_0827: Psest_0827 - Nitric oxide reductase large subunit, at 898,063 to 899,487
_0827
Position (kb) 896
897
898 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 896.155 kb on + strand, within Psest_0823 at 896.156 kb on - strand, within Psest_0823 at 896.196 kb on + strand, within Psest_0823 at 896.197 kb on - strand, within Psest_0823 at 896.229 kb on + strand, within Psest_0823 at 896.229 kb on + strand, within Psest_0823 at 896.230 kb on - strand, within Psest_0823 at 896.230 kb on - strand, within Psest_0823 at 897.159 kb on - strand, within Psest_0825 at 897.544 kb on + strand at 897.544 kb on + strand at 897.613 kb on + strand at 897.613 kb on + strand at 897.614 kb on - strand at 897.614 kb on - strand at 897.617 kb on + strand at 897.617 kb on + strand at 897.617 kb on + strand at 897.617 kb on + strand at 897.618 kb on - strand at 897.618 kb on - strand at 897.618 kb on - strand at 897.618 kb on - strand at 897.649 kb on - strand, within Psest_0826 at 897.661 kb on + strand, within Psest_0826 at 897.661 kb on + strand, within Psest_0826 at 897.661 kb on + strand, within Psest_0826 at 897.662 kb on - strand, within Psest_0826 at 897.662 kb on - strand, within Psest_0826 at 897.662 kb on - strand, within Psest_0826 at 897.662 kb on - strand, within Psest_0826 at 897.662 kb on - strand, within Psest_0826 at 897.662 kb on - strand, within Psest_0826 at 897.662 kb on - strand, within Psest_0826 at 897.665 kb on + strand, within Psest_0826 at 897.665 kb on + strand, within Psest_0826 at 897.665 kb on + strand, within Psest_0826 at 897.665 kb on + strand, within Psest_0826 at 897.665 kb on + strand, within Psest_0826 at 897.665 kb on + strand, within Psest_0826 at 897.665 kb on + strand, within Psest_0826 at 897.666 kb on - strand, within Psest_0826 at 897.666 kb on - strand, within Psest_0826 at 897.726 kb on + strand, within Psest_0826 at 897.794 kb on + strand, within Psest_0826 at 897.986 kb on - strand at 898.117 kb on + strand at 898.117 kb on + strand at 898.117 kb on + strand at 898.117 kb on + strand at 898.117 kb on + strand at 898.117 kb on + strand at 898.118 kb on - strand at 898.118 kb on - strand at 898.183 kb on + strand at 898.183 kb on + strand at 898.183 kb on + strand at 898.183 kb on + strand at 898.291 kb on + strand, within Psest_0827 at 898.291 kb on + strand, within Psest_0827 at 898.291 kb on + strand, within Psest_0827 at 898.291 kb on + strand, within Psest_0827 at 898.292 kb on - strand, within Psest_0827 at 898.292 kb on - strand, within Psest_0827 at 898.294 kb on + strand, within Psest_0827 at 898.294 kb on + strand, within Psest_0827 at 898.294 kb on + strand, within Psest_0827 at 898.294 kb on + strand, within Psest_0827 at 898.294 kb on + strand, within Psest_0827 at 898.295 kb on - strand, within Psest_0827 at 898.295 kb on - strand, within Psest_0827 at 898.295 kb on - strand, within Psest_0827 at 898.295 kb on - strand, within Psest_0827
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 896,155 + Psest_0823 0.50 +0.3 896,156 - Psest_0823 0.51 -0.1 896,196 + Psest_0823 0.58 -0.1 896,197 - Psest_0823 0.59 +0.1 896,229 + Psest_0823 0.65 +1.2 896,229 + Psest_0823 0.65 -0.4 896,230 - Psest_0823 0.65 -0.7 896,230 - Psest_0823 0.65 -0.3 897,159 - Psest_0825 0.67 -0.4 897,544 + +0.2 897,544 + -1.1 897,613 + +0.1 897,613 + -0.1 897,614 - -1.3 897,614 - -0.4 897,617 + -0.1 897,617 + -0.4 897,617 + +0.9 897,617 + +0.2 897,618 - -0.1 897,618 - -0.1 897,618 - -2.3 897,618 - -0.2 897,649 - Psest_0826 0.16 -0.3 897,661 + Psest_0826 0.19 -0.9 897,661 + Psest_0826 0.19 -0.0 897,661 + Psest_0826 0.19 +1.1 897,662 - Psest_0826 0.19 +0.5 897,662 - Psest_0826 0.19 +0.8 897,662 - Psest_0826 0.19 -0.2 897,662 - Psest_0826 0.19 +0.2 897,662 - Psest_0826 0.19 +0.7 897,662 - Psest_0826 0.19 +0.7 897,662 - Psest_0826 0.19 -0.2 897,665 + Psest_0826 0.20 -0.1 897,665 + Psest_0826 0.20 -3.1 897,665 + Psest_0826 0.20 +0.1 897,665 + Psest_0826 0.20 +1.3 897,665 + Psest_0826 0.20 +0.6 897,665 + Psest_0826 0.20 -0.5 897,665 + Psest_0826 0.20 +0.4 897,666 - Psest_0826 0.20 -0.5 897,666 - Psest_0826 0.20 -0.1 897,726 + Psest_0826 0.34 -0.5 897,794 + Psest_0826 0.49 -0.2 897,986 - -0.1 898,117 + -0.0 898,117 + -0.8 898,117 + -0.2 898,117 + +1.5 898,117 + +0.7 898,117 + +1.1 898,118 - -0.0 898,118 - -0.4 898,183 + +0.1 898,183 + -2.7 898,183 + +0.2 898,183 + +0.9 898,291 + Psest_0827 0.16 +0.4 898,291 + Psest_0827 0.16 +1.2 898,291 + Psest_0827 0.16 -0.2 898,291 + Psest_0827 0.16 -0.1 898,292 - Psest_0827 0.16 -0.8 898,292 - Psest_0827 0.16 -0.9 898,294 + Psest_0827 0.16 -0.7 898,294 + Psest_0827 0.16 -0.3 898,294 + Psest_0827 0.16 -0.1 898,294 + Psest_0827 0.16 +1.2 898,294 + Psest_0827 0.16 +0.6 898,295 - Psest_0827 0.16 -0.3 898,295 - Psest_0827 0.16 +0.5 898,295 - Psest_0827 0.16 -0.0 898,295 - Psest_0827 0.16 +1.5
Or see this region's nucleotide sequence