Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3523

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3521 and Psest_3522 are separated by 115 nucleotidesPsest_3522 and Psest_3523 are separated by 113 nucleotidesPsest_3523 and Psest_3524 overlap by 1 nucleotides Psest_3521: Psest_3521 - H+/gluconate symporter and related permeases, at 3,700,757 to 3,702,148 _3521 Psest_3522: Psest_3522 - 3-hydroxybutyrate dehydrogenase, at 3,702,264 to 3,703,034 _3522 Psest_3523: Psest_3523 - putative thymidine phosphorylase, at 3,703,148 to 3,704,728 _3523 Psest_3524: Psest_3524 - ribose-phosphate pyrophosphokinase, at 3,704,728 to 3,705,624 _3524 Position (kb) 3703 3704 3705Strain fitness (log2 ratio) -2 -1 0 1 2at 3702.718 kb on - strand, within Psest_3522at 3702.718 kb on - strand, within Psest_3522at 3702.718 kb on - strand, within Psest_3522at 3702.832 kb on + strand, within Psest_3522at 3702.832 kb on + strand, within Psest_3522at 3702.832 kb on + strand, within Psest_3522at 3702.833 kb on - strand, within Psest_3522at 3702.833 kb on - strand, within Psest_3522at 3703.114 kb on + strandat 3703.114 kb on + strandat 3703.114 kb on + strandat 3703.114 kb on + strandat 3703.114 kb on + strandat 3703.114 kb on + strandat 3703.118 kb on + strandat 3703.225 kb on + strandat 3703.226 kb on - strandat 3703.248 kb on - strandat 3704.317 kb on - strand, within Psest_3523at 3704.619 kb on - strandat 3704.746 kb on + strandat 3704.747 kb on - strandat 3704.747 kb on - strandat 3704.747 kb on - strandat 3704.747 kb on - strandat 3704.747 kb on - strandat 3704.899 kb on + strand, within Psest_3524at 3705.001 kb on + strand, within Psest_3524at 3705.001 kb on + strand, within Psest_3524at 3705.001 kb on + strand, within Psest_3524at 3705.001 kb on + strand, within Psest_3524at 3705.001 kb on + strand, within Psest_3524at 3705.001 kb on + strand, within Psest_3524at 3705.001 kb on + strand, within Psest_3524at 3705.002 kb on - strand, within Psest_3524at 3705.002 kb on - strand, within Psest_3524at 3705.010 kb on + strand, within Psest_3524at 3705.010 kb on + strand, within Psest_3524at 3705.010 kb on + strand, within Psest_3524at 3705.011 kb on - strand, within Psest_3524at 3705.011 kb on - strand, within Psest_3524at 3705.011 kb on - strand, within Psest_3524at 3705.011 kb on - strand, within Psest_3524at 3705.011 kb on - strand, within Psest_3524at 3705.717 kb on + strandat 3705.717 kb on + strandat 3705.717 kb on + strandat 3705.717 kb on + strandat 3705.717 kb on + strandat 3705.718 kb on - strandat 3705.718 kb on - strandat 3705.718 kb on - strandat 3705.718 kb on - strandat 3705.718 kb on - strandat 3705.718 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,702,718 - Psest_3522 0.59 -0.2
3,702,718 - Psest_3522 0.59 +1.2
3,702,718 - Psest_3522 0.59 +0.9
3,702,832 + Psest_3522 0.74 -0.4
3,702,832 + Psest_3522 0.74 +0.3
3,702,832 + Psest_3522 0.74 -0.1
3,702,833 - Psest_3522 0.74 -0.3
3,702,833 - Psest_3522 0.74 +1.2
3,703,114 + +0.4
3,703,114 + +0.6
3,703,114 + +1.4
3,703,114 + +0.4
3,703,114 + +0.1
3,703,114 + -0.9
3,703,118 + +1.3
3,703,225 + -1.0
3,703,226 - +0.0
3,703,248 - +0.7
3,704,317 - Psest_3523 0.74 -0.1
3,704,619 - +0.1
3,704,746 + -0.2
3,704,747 - +0.9
3,704,747 - -0.1
3,704,747 - +1.9
3,704,747 - -0.1
3,704,747 - -0.4
3,704,899 + Psest_3524 0.19 -0.5
3,705,001 + Psest_3524 0.30 -0.4
3,705,001 + Psest_3524 0.30 -1.5
3,705,001 + Psest_3524 0.30 +0.4
3,705,001 + Psest_3524 0.30 -0.9
3,705,001 + Psest_3524 0.30 -0.2
3,705,001 + Psest_3524 0.30 -0.6
3,705,001 + Psest_3524 0.30 -1.5
3,705,002 - Psest_3524 0.31 -1.6
3,705,002 - Psest_3524 0.31 -0.8
3,705,010 + Psest_3524 0.31 +0.7
3,705,010 + Psest_3524 0.31 -2.7
3,705,010 + Psest_3524 0.31 +0.5
3,705,011 - Psest_3524 0.32 -0.9
3,705,011 - Psest_3524 0.32 -0.3
3,705,011 - Psest_3524 0.32 +0.5
3,705,011 - Psest_3524 0.32 -0.7
3,705,011 - Psest_3524 0.32 -1.0
3,705,717 + +2.1
3,705,717 + -0.2
3,705,717 + +0.3
3,705,717 + +1.2
3,705,717 + +0.9
3,705,718 - +0.2
3,705,718 - -0.3
3,705,718 - -0.8
3,705,718 - +0.6
3,705,718 - +0.4
3,705,718 - -0.6

Or see this region's nucleotide sequence