Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1830 and Psest_1831 are separated by 446 nucleotides Psest_1831 and Psest_1832 overlap by 8 nucleotides Psest_1832 and Psest_1833 overlap by 41 nucleotides
Psest_1830: Psest_1830 - Periplasmic protein involved in polysaccharide export, at 1,931,122 to 1,932,222
_1830
Psest_1831: Psest_1831 - bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family, at 1,932,669 to 1,933,436
_1831
Psest_1832: Psest_1832 - Predicted glycosyltransferases, at 1,933,429 to 1,934,304
_1832
Psest_1833: Psest_1833 - hypothetical protein, at 1,934,264 to 1,935,517
_1833
Position (kb)
1932
1933
1934 Strain fitness (log2 ratio)
-1
0
1 at 1932.382 kb on - strand at 1932.419 kb on - strand at 1932.462 kb on - strand at 1932.462 kb on - strand at 1932.462 kb on - strand at 1932.558 kb on - strand at 1932.660 kb on + strand at 1932.675 kb on - strand at 1932.966 kb on + strand, within Psest_1831 at 1933.267 kb on + strand, within Psest_1831 at 1933.268 kb on - strand, within Psest_1831
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 1,932,382 - -0.1 1,932,419 - -0.9 1,932,462 - +0.2 1,932,462 - +0.0 1,932,462 - +0.7 1,932,558 - +0.2 1,932,660 + -0.5 1,932,675 - -0.3 1,932,966 + Psest_1831 0.39 -0.1 1,933,267 + Psest_1831 0.78 -0.5 1,933,268 - Psest_1831 0.78 +0.5
Or see this region's nucleotide sequence