Pairwise Alignments

Query, 1055 a.a., multidrug efflux RND transporter permease subunit from Rhodanobacter denitrificans FW104-10B01

Subject, 1053 a.a., multidrug transporter from Pseudomonas simiae WCS417

 Score = 1001 bits (2588), Expect = 0.0
 Identities = 527/1040 (50%), Positives = 706/1040 (67%), Gaps = 22/1040 (2%)

Query: 1    MPSFFIDRPIFAWVVAILISLGGVLAILNLGVESYPNIAPPSVTVGASYPGASAETTEKA 60
            M  FFIDRPIFAWV+A++I L G L+IL L +  YP IAP ++ +  +YPGASA+T +  
Sbjct: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPAIAPTAIDIQVTYPGASAQTVQDT 60

Query: 61   VTQVIEQQLTGIDHLLYFSSSSSASGRASITLTFESGTDPDIAQVQVQNKVALATPRLPS 120
            V QVIEQQL GID+L Y SS S++ G  +IT+TF  GT+PDIAQVQVQNK+ LATP LP 
Sbjct: 61   VVQVIEQQLNGIDNLRYVSSDSNSDGSMTITVTFNQGTNPDIAQVQVQNKLNLATPLLPQ 120

Query: 121  EVTQQGVVVAKANAGFLMVVALKSDNPNIDRDRLGDIVGSQVLDQIARVPGVGSTQQFGS 180
            EV QQG+ V K+   FLMV+ L S++ ++ +D L + + S + D I+R  GVG  Q FGS
Sbjct: 121  EVQQQGIRVTKSVKNFLMVIGLVSEDGSMTKDDLSNYIVSNIQDPISRTAGVGDFQVFGS 180

Query: 181  EYAMRIWLNPDQLHGYGLSATQVLNAIRAQNVQFAAGSIGADPALPGQGFTATVSTEGRF 240
            +YAMRIWL+P +L+ Y L+   V  AI AQNVQ A G +G  PALPG    AT+  + R 
Sbjct: 181  QYAMRIWLDPSKLNNYQLTPVDVSTAISAQNVQVATGQLGGLPALPGTQLNATIIGKTRL 240

Query: 241  TTPEQFAGIILRANPDGTTVKLGDVARISFGPGNYGFNTTVDGKPIGAFAIQLLPGANAL 300
             T EQF  I+++ N DG+ V+L DVARI  G  NY      +GKP    AI+L  GANAL
Sbjct: 241  QTAEQFGNILMKVNTDGSQVRLKDVARIELGGQNYSIAAQFNGKPASGMAIKLASGANAL 300

Query: 301  NVATAVRGKMDELAPGFPPGVSWFSPYDSTTFVKISIDQVVNTLVEAIVLVFLVMLLFLQ 360
            +   A+R  + +L P FPPG+    PYD+T  V  SI  VV+TLVEAIVLVFLVM LFLQ
Sbjct: 301  DTGKAIRATVAQLEPFFPPGMKAVVPYDTTPVVTESISGVVHTLVEAIVLVFLVMFLFLQ 360

Query: 361  NLRATIIPTLVIPVALLGTFLGMLVLGFTINQLTLFGMVLAIGIVVDDAIVVIENVERIM 420
            N RATII T+ +PV LLGTF  +   GFTIN LT+FGM+LAIG++VDDAIVV+ENVER+M
Sbjct: 361  NFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMILAIGLLVDDAIVVVENVERVM 420

Query: 421  TEENLSPKEATRKAMGQITGAVVAITVVLTAVFVPSALQPGASGIIYKQFALTIAVSMAF 480
             EE+LSPKEAT K+MGQI GA+V I +VL+AV +P A   G++G+IYKQF++TI  +MA 
Sbjct: 421  AEEHLSPKEATVKSMGQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMAL 480

Query: 481  SAFLALSFTPALCASFLQP----EHHKKKNIVFRKFNQFFEWATHTYTGHVGNAVRHAPR 536
            S  +AL FTPALCA+ L+P    +H + K   F  FN+ F+    +Y   VGN ++H   
Sbjct: 481  SVLVALIFTPALCATMLKPIDPEKHGQPKRGFFGWFNRTFDRGVLSYERGVGNMIKHKIP 540

Query: 537  WMFVFVLVAVLGGFLYTRLPGSFLPEEDQGYAMSVIQLPPGSTKQRTEEVMGQMLTILKK 596
               V+ LV     +L+ R+P +FLP+EDQG   + +Q P GST +RT++V+  M   L  
Sbjct: 541  AFLVYALVIAGMIWLFMRIPAAFLPDEDQGVIFAQVQTPVGSTAERTQKVIDDMRIFLLN 600

Query: 597  D--------PAVDTVLQVTGFSFIGAGENAGMAFIKLKDWSERQGTAADF--IQRANRSL 646
            D          V +V  V GF+F G G+++G+AF+ LK W ER  + + F   +RA    
Sbjct: 601  DKEGEPGEGKGVKSVFTVNGFNFAGRGQSSGLAFVMLKPWDERDASTSVFEIAKRAQGYF 660

Query: 647  FQ-IHDARIFVVNIPTVQGLGQFGGFDMYLQDRSGAGREALTQARNTLLGKASQDPLLTG 705
             Q   DA +F +  P+V  LG   GFD++LQD+ G G + L  ARN  LG A+Q  +L G
Sbjct: 661  MQTFKDAMVFAIVPPSVLELGNATGFDVFLQDQGGVGHDKLMAARNQFLGMAAQSKILAG 720

Query: 706  VRPNALEDAPQLRLDVDRVQAQSMGLSVGDIYNAVGLMLAPVYVNDFTYGGRVKRVIMQA 765
            VRPN + D PQ  L VD  +A + G+++  I   + + L   YVNDF   GRVK+V +Q 
Sbjct: 721  VRPNGVNDEPQYELTVDDEKASAQGITLSSINQTLAIALGGSYVNDFIDRGRVKKVYVQG 780

Query: 766  DSSYRMSPDALQHFFTPSTQTTAAGTPAMIPLSNVVHANWQMGSPSLNRYNGYAAVEIVG 825
            +++ RMSP+ L  ++  S       +  M+PLS +    W  GSP L+RYNG AA+EI+G
Sbjct: 781  EAASRMSPEDLNKWYVRS------DSGKMVPLSAIASGKWIFGSPKLSRYNGVAAMEILG 834

Query: 826  SPAPGHASGEAMAEMEKIVGNDLPKGYGFDWTGQSYQEILSGNAATLLMVLSIVIVFLAL 885
            +PAPG+++G+AMAE+E+I    LP G G+ WTG SY+E LSG+ A  L  LS+++VFL L
Sbjct: 835  TPAPGYSTGDAMAEVERI-AKQLPAGIGYAWTGLSYEERLSGSQAPALYALSLLVVFLCL 893

Query: 886  AALYESWSIPVSVLLVLPLGLLGAVVFTLLRGLPNDIYFKVGLITVIGLAAKNAILIVEF 945
            AALYESWSIP++V+LV+PLG++GA++ T +RGL ND++F+VGL+  +GLAAKNAILIVEF
Sbjct: 894  AALYESWSIPIAVILVVPLGVVGALIATSMRGLSNDVFFQVGLLVTVGLAAKNAILIVEF 953

Query: 946  AVEQQAHGRTLREGVIEAARLRLRPILMTSLAFILGVFPLFVSSGAGANARHAIGTGVIG 1005
            A E    G+ + E  IEA+R+RLRPI+MTS+AFILGV PL +SSGAG+ ++HAIGTGVIG
Sbjct: 954  AKELHEQGKGIVEAAIEASRMRLRPIIMTSMAFILGVLPLAISSGAGSGSQHAIGTGVIG 1013

Query: 1006 GMLFATLLGVLLIPVFYVVV 1025
            GM+ AT+L +  +P+F+  V
Sbjct: 1014 GMITATVLAIFWVPLFFATV 1033