Pairwise Alignments

Query, 617 a.a., ABC transporter, periplasmic substrate-binding protein from Pseudomonas fluorescens FW300-N2E2

Subject, 604 a.a., Uncharacterized protein YejA from Escherichia coli ECRC98

 Score =  438 bits (1127), Expect = e-127
 Identities = 237/589 (40%), Positives = 329/589 (55%), Gaps = 6/589 (1%)

Query: 4   LRALLLQASSLLFTGLACAAPQHAVTLYNEPPKYPANFKHFDYVNPDAPKGGIFRQGGFG 63
           +R LLL  +   F   A A  +         P+Y  NF HFDYVNP APKGG       G
Sbjct: 3   VRILLLFIALFTFGAQAQAIKESYAFAVLGEPRYAFNFNHFDYVNPAAPKGGQITLSALG 62

Query: 64  GFDSLNPFISKGVPADDIGLIYDTLAKQGLDEPFTEYGLIAEKIEKAPDNGWVRFYLRPE 123
            FD+ N +  +G P      +YDTL     DEP + Y LIAE    A D  WV   + P 
Sbjct: 63  TFDNFNRYALRGNPGARTEQLYDTLFTTSDDEPGSYYPLIAESARYADDYSWVEVAINPR 122

Query: 124 ARFNDGHPVRAEDVVFSFQTLTKDGAPMFRGYYNDVADVIAEDPLKVLFKFKHTNNRELP 183
           ARF+DG P+ A DV F+FQ    +G P FR  Y     V A  PL V  +       ++ 
Sbjct: 123 ARFHDGSPITARDVEFTFQKFMTEGVPQFRLVYKGTT-VKAIAPLTVRIELAKPGKEDM- 180

Query: 184 LILGQLPVLPKHWWAERDFSKGNLEIPLGSGPYKVAEVKAGRSIRYERVKDYWGKDLPVN 243
           L L  LPV P+ +W +   S      PL SGPY++   K G++I Y RVKDYW  +LPVN
Sbjct: 181 LSLFSLPVFPEKYWKDHKLSDPLATPPLASGPYRITSWKMGQNIVYSRVKDYWAANLPVN 240

Query: 244 RGFYNFDVLATDYYRDNTVAVEALKAGQFDFWLEMTAKNWANAYNIPAVTEGRLIKEQIP 303
           RG +NFD +  DYY D+ VA EA KAG FD  +E  AKNWA  Y+     +  +IK++  
Sbjct: 241 RGRWNFDTIRYDYYLDDNVAFEAFKAGAFDLRMENDAKNWATRYSGKNFDKKYIIKDEQK 300

Query: 304 NGNPTGMQGFVYNLRRPIFQDVRVRKALSLLLDFEWTNKQLFNGAYARTRSYFENSEMAA 363
           N +    +   +N++RP+F D RVR+A++L  DFEW NK LF  A++RT SYF+N+E AA
Sbjct: 301 NESAQDTRWLAFNIQRPVFSDRRVREAITLAFDFEWMNKALFYNAWSRTNSYFQNTEYAA 360

Query: 364 TGLPGEDELKILEPLRGKIPEQVFTDAFQPSMCDGSGMIRDQQRKAYQLLQEAGWRIVDD 423
              P   EL +L P++  +P +VFT  +QP +  G G  RD   KA +LL EAGW +   
Sbjct: 361 RNYPDAAELVLLAPMKKDLPPEVFTQIYQPPVSKGDGYDRDNLLKADKLLNEAGWVLKGQ 420

Query: 424 KMVDA-QGKPVVLEFLLAQTEFERILLPFKRNLSDLGIELIIRRVDVSQFVNRVRSRDFD 482
           + V+A  G+P+  E LL  +   + +LPF+ +L  LGI + IR+VD SQ  NR+RSRD+D
Sbjct: 421 QRVNATTGQPLSFELLLPASSNSQWVLPFQHSLQRLGINMDIRKVDHSQITNRMRSRDYD 480

Query: 483 LVVGSFPQSSSPGNEQREFWMSAAADKPGSRNTMGLKDPAVDQLVEQLINADSRK-SLVA 541
           ++   +     P ++ +  W S   +   + N  G++ P +D L+ Q+I A   K  L+ 
Sbjct: 481 MMPRLWRAMQWPSSDLQISWSSEYIN--STYNAPGVQSPVIDSLINQIIAAQGNKEKLLP 538

Query: 542 HARALDRVLQWGYYVIPNWHIKTWRVAYWNHIGHPKITPTYDIGTTTWW 590
             RALDRVL W YY++P W++   R+A+W+    P + P Y +G  TWW
Sbjct: 539 LGRALDRVLTWNYYMLPMWYMAEDRLAWWDKFSQPAVRPVYSLGIDTWW 587