Pairwise Alignments

Query, 834 a.a., Ferrichrome-iron receptor from Pseudomonas fluorescens FW300-N2E2

Subject, 817 a.a., ligand-gated channel protein from Herbaspirillum seropedicae SmR1

 Score =  448 bits (1153), Expect = e-130
 Identities = 296/821 (36%), Positives = 436/821 (53%), Gaps = 51/821 (6%)

Query: 37  VVPMLAVAAQNGVTASRQSYNIAPGPLSDVLNQFARQAGITLASTPAQTGGVQSPGLKGE 96
           + P L V A     A +Q ++I PGPL  VL +FA+ A + LA    +  G  SPGL G 
Sbjct: 25  LAPALMVTAALHAQAVQQRFDIPPGPLEQVLARFAQAADVPLALQSGKLQGQHSPGLAGS 84

Query: 97  YSPDQALSQLLSGSGLVAVSQDGSSYVLQTETAGSTLELPTTDIKGFAL------GNALG 150
           YS       LL+GSG   + +  S YVL   +  +T    TT     +L       +A  
Sbjct: 85  YSVQAGFDALLAGSGY-RIGKTASGYVLVPASEAATPSAATTPAASGSLPAIQISASADP 143

Query: 151 SMEGYNATHSQVATKTSTALRETSQSVSVVTREQMDDQGAQTVSQAMRYTPGVLTNPYGA 210
             + + A  S   TKT+T L E  QS+SVVT E++   GA T   A+ YTPGV  +PYG+
Sbjct: 144 GEQRWTARDSASTTKTATPLIEVPQSISVVTAERIAAMGATTARDALGYTPGVNISPYGS 203

Query: 211 THRYDYVAMRGFNDGSVDNIYLDGLKSMGDSGTYSSMQVDPYFLERVDILKGPSSVLYGR 270
             RYD++ +RGF D      YLDGL  + ++ +++  + + Y +E++ +L+GP+SVLYG+
Sbjct: 204 DSRYDWINLRGF-DAYSPGFYLDGLP-LRNANSFAVWRTENYGIEQLAVLRGPASVLYGQ 261

Query: 271 SSPGGLVALTSKKPQYEAYHQIQATVGTQGQRGMGFDFTGPVDDDKRITYRLIGLADTSD 330
           + PGG+V + SK P  +A  ++Q  +G+  +R +G D  G +D D R+ YR+IG+   ++
Sbjct: 262 AGPGGVVNVVSKLPSADAPRELQVQLGSDRRRQVGADIGGAIDADGRLLYRVIGVVRDAE 321

Query: 331 TQFDHNKEKRFALAPTVNIDFSEDTSLTLQAYLQHDPDGGYHGGMPADGTL-HQRNGRRI 389
                 K  R  LAP++    S  TSLTLQA L  D  G Y    P  G+L     G  I
Sbjct: 322 LPAGGMKNDRLYLAPSLVWKISAATSLTLQAALLRDQGGVYTRTRPLVGSLVPTAIGTTI 381

Query: 390 SEHFFEGEPGIDRYERDQQSFGYQFEHRFNDVFTARQNFR--YLDSEVKNDQVYAYDWTT 447
               + G P  D + +DQ+ FGY+  HRF++ F   Q+ R  ++ ++ +  Q   +    
Sbjct: 382 PSELYTGNPHFDHFSQDQELFGYRLAHRFDERFAFTQSARVGHMSTDYRAVQTPRFATLN 441

Query: 448 PTS-------NELNRYYTGAEEKLHSFIVDNMLQAEFFTGATKHTVLMGADYQR-RKTVV 499
             +         L R   G+ E    F +DN LQA+F TGA +HTVL G DYQR R   V
Sbjct: 442 AANPNDPVNFQNLTRNLFGSRESATMFSIDNQLQADFSTGAVRHTVLAGVDYQRSRFDAV 501

Query: 500 DWTSGSLAPINAFDPVYGNSAITGRYNTSYLRR-LEQTGVYLQDLIEMDK-WRFSLGLRQ 557
            ++ GS   +N   P Y N         S  R  L QTG+YLQD I+ +  W  +LG R 
Sbjct: 502 SFSGGSAPLLNIAAPSYPNGPFVVPAPYSDNRAVLTQTGIYLQDQIKWNNGWEVTLGGRH 561

Query: 558 DWVQTSDENRIAEFGRPEGTEINDKRTKLTGRAGALYLFDNGLAPYISYSESFNPNSYAD 617
           D   ++ +NR+      +G+  +    K T RA  LY   NGLAPY+SY+ESFNP +  +
Sbjct: 562 DSASSTVDNRL------DGSRTSSTDRKFTRRAAVLYHAANGLAPYLSYTESFNPTATVN 615

Query: 618 SAGN-PLPPTDGKQWELGLKYQPPGTDDLYTASLFRIDQENLATKLPQDNFY-RAVGAVR 675
              N    P  GKQ E+GL+YQPPGT+DLY+A+LF + ++N  +     NF     G + 
Sbjct: 616 PLTNQSFGPETGKQTEVGLRYQPPGTNDLYSAALFDLKRQNYISY--DANFMPTQKGEIA 673

Query: 676 SQGLELEAHLQLTEQLKVLGSYTFTDIEYSKSMISTLSTPTDIIENKGNSPTQAPRHMAS 735
            +GLELEA  Q    L++  +Y++T     +++++  S P +I    G        H  S
Sbjct: 674 VRGLELEAVTQPMAALRLTAAYSYT----PRAVVTASSRPAEI----GKQAAAVLLHQFS 725

Query: 736 VWADYKFDSGTLDGLRLGGGVRYVGYSWADAENT-MKVPSYTLFDASVGYDLSKVGLKGV 794
           VW D++      +G+RLG G RYV  +  +   T +KVP YTL D  +GYD ++  L   
Sbjct: 726 VWGDHRLG----NGVRLGLGARYVSATSGNGGGTPVKVPGYTLLDGLLGYDFARWSL--- 778

Query: 795 DVRLNANNLTNESYVASC-ASLSFCYMGEERNVAATVSYQF 834
              LN  NLT++ Y+ +C  + S CY G++R+V AT SY++
Sbjct: 779 --ALNLRNLTDKRYLTNCDTTASMCYYGDQRSVLATASYRW 817