Pairwise Alignments

Query, 428 a.a., Outer membrane porin, OprD family from Pseudomonas fluorescens FW300-N2E2

Subject, 441 a.a., outer membrane porin from Pseudomonas syringae pv. syringae B728a

 Score =  262 bits (670), Expect = 1e-74
 Identities = 170/443 (38%), Positives = 241/443 (54%), Gaps = 59/443 (13%)

Query: 19  AMANDQAESKGFVEDSSLKVLLRNAYINRDYKDG------NQDKAEWGQAAIGTFSSGFT 72
           A+A +Q E  GF+E S+L VL RN Y+NRD+++G      N     W Q  IG F SGFT
Sbjct: 23  ALAEEQKE--GFIEGSTLTVLNRNFYMNRDHRNGESSPTGNGYSEAWAQGIIGRFQSGFT 80

Query: 73  QGTVGVGVDAFGLYALRLDGGKGRSGA-GGIDFFKQGDSGNAADDLSKFGAAVKFRVSNT 131
           QGT GVGVDAF +  ++LD G GR+G     D       GNA D+ SK G ++K R  +T
Sbjct: 81  QGTFGVGVDAFAMIGIKLDTGDGRNGGRSAFDVLPVDGQGNARDEYSKVGGSLKARAFDT 140

Query: 132 VLAYGDQMPALPVLSYDNSRLLPESYTGTLITSKEIKGLELNAGRFTAESRK-SAEGRD- 189
           V+  GD  P+ PV+++ +SRLLPES+ G    +  I GL L  GR  + S+  S+  RD 
Sbjct: 141 VVNVGDVFPSTPVVAFGDSRLLPESFRGVTAINNSISGLTLQGGRLHSMSQPVSSNLRDG 200

Query: 190 -----SGGLKS--INVLGGSYQFTEQFKASLYASDVEDVLKKQYVNANYVFPLAKDQSLT 242
                 G + S  +   GG YQ T++    LY S ++D   ++Y +A+YV PL+ D +LT
Sbjct: 201 FVTFYGGAVDSPWVAYFGGDYQATDRLSLGLYTSRLKDAWDQKYASASYVLPLSDDLALT 260

Query: 243 LDFNGYRTKLDNSYVRENNVTGD-DNKIWSLAATFATGPHSFTLAHQRSTGDSNLGYAYG 301
              N Y     N+      + G+ DN IWS       G H+ +L+HQR+ GD +  Y   
Sbjct: 261 GSLNYY-----NATDEGKKLLGEFDNDIWSAKLALQYGAHTLSLSHQRNEGDDDFDYL-- 313

Query: 302 GYQREQNRVGDGGNTIYLANS-YWSDFNAEDERSWQLGYGLDFTTFGVPGLTYNVAYVRG 360
                  R  D   +IYLANS  +SDFN+  ERSW + Y LD +TFGVPGL++   Y +G
Sbjct: 314 -------RQSD---SIYLANSIQYSDFNSPKERSWMVTYNLDMSTFGVPGLSFMTRYGKG 363

Query: 361 DNITTS----------------TSEGGTEREIFNQFKYVVQSGPAKDLSVRLRSSVLRVS 404
            +   S                T +   ER+I  + KY+VQ+G  KDLS+R+R +  R +
Sbjct: 364 TDADYSNANSTYMRRDAQGNPLTDQKRWERDI--EAKYIVQTGSLKDLSLRVRQATTRAT 421

Query: 405 QKSSEYNVSGNELRVFVDYPINV 427
              S+     +E+RV V+YP++V
Sbjct: 422 AFESDL----DEVRVIVEYPLSV 440