Pairwise Alignments

Query, 610 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas fluorescens FW300-N2E2

Subject, 614 a.a., ABC transporter related (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  511 bits (1315), Expect = e-149
 Identities = 265/605 (43%), Positives = 383/605 (63%), Gaps = 1/605 (0%)

Query: 5   RFETLIDIFRDAPSSAPPNRVLPFYTYYLKQVWPSFAVLLVVGLIGALIEVALFSYLSRI 64
           R E LID F+ A    PP  +  F  + L    P   +   +      +EV   + L  +
Sbjct: 6   RIENLIDGFQPA-EGPPPQTLWAFLRWCLSGSMPVLWIAAALSAFAGTLEVLSATLLGLV 64

Query: 65  IDLTQGTPNVDFFKVHGLELAWMAVVALVFRPIFVALHDLLVHQTLSPGMTSLIRWQNHS 124
           ID         FF      +   A   ++ RP+   L        + P +  L+  + H 
Sbjct: 65  IDTALTAGPEGFFASEWPTVLLFAAFFILIRPVIFGLSSAANAIVVQPNLNPLVLSRLHR 124

Query: 125 YVLKQSLNFFQNDFAGRIAQRIMQTGNSLRDSAVQAVDALWHVLIYAISSLVLFAEADWR 184
           + + QS++FF NDFAGRIAQ+ MQT  ++ D   + ++ +   L   + S++L    D  
Sbjct: 125 WTMGQSVSFFDNDFAGRIAQKQMQTARAVTDITAEVINVVAFALASILGSVILLLTIDPW 184

Query: 185 LMIPLLMWIAAYIGALCYFVPRVKERSVVSSDARSKLMGRIVDGYTNITTLKLFAHTNFE 244
           + + L +W  AY+  +  F+PRV++RS   + AR+ + G++VD  TNI T+KLF H+  E
Sbjct: 185 VALALGVWFVAYMALIRAFLPRVRKRSAARAGARANVTGQVVDTVTNIKTVKLFGHSEHE 244

Query: 245 QQYAREAIQEQTEKAQLAGRVVTSMDVVITSMNGLLIVGTTGLALWLWTQSLISVGAIAL 304
            Q A +A+     KA   G + +S    + ++ G+L V   G  L LWTQ   + G IA 
Sbjct: 245 DQAALDAMGSYRRKALDFGYISSSFRFWLMAIAGVLPVLLIGGTLILWTQGTATPGDIAA 304

Query: 305 ATGLVIRIVNMSGWIMWVVNGIFENIGMVQDGLQTIAQPVSVTDRDQAKPLAVARGEVRF 364
           A  + IRI  M+GW+ + +  I+ N+G V+DG++T+  P ++TD D A  +   RG + F
Sbjct: 305 AGAIAIRIAQMTGWVSFTLMAIYANVGEVEDGMRTLTVPHALTDADDASEMEARRGRITF 364

Query: 365 EHVDFHYGKKSGVIGDLNLIIKPGEKIGLIGPSGAGKSTLVNLLLRLYDVQGGRILIDGQ 424
           E+V F YG+  G I  ++L + PG+K+GL+G SGAGKSTL  LLLRLYD + GR+ IDG 
Sbjct: 365 ENVTFMYGRDVGGIDGISLTVAPGQKLGLVGASGAGKSTLTGLLLRLYDTEEGRVTIDGV 424

Query: 425 DIAEVGQESLRERIGMITQDTSLLHRSIRDNLLYGKPDATDAQLWEAVRKARADEFIPLL 484
           D+ +V Q+SLR++I M+TQ+T++ +RS RDN+LYG+PDAT+A++  A ++A A +FI  +
Sbjct: 425 DVRDVTQDSLRQQIAMVTQETAMFNRSARDNILYGRPDATEAEMIAAAKRAEAHDFIMDM 484

Query: 485 SDAEGRTGFDAHVGERGVKLSGGQRQRIAIARVLLKDAPILIMDEATSALDSEVEAAIQE 544
            D  GR G+DAH+GERGVKLSGGQRQRIA+AR  LKDAPIL++DEATSALDSEVEA+IQ+
Sbjct: 485 QDHAGRKGYDAHLGERGVKLSGGQRQRIALARAFLKDAPILVLDEATSALDSEVEASIQD 544

Query: 545 SLETLMQGKTVIAIAHRLSTIARMDRLVVLENGRIAETGSHAELLAHGGLYARLWQHQTG 604
           +L+ +M+GKTVIAIAHRLSTIA+MDR+VVL+ GR+ E G+H +LLA GGLYAR W  Q+G
Sbjct: 545 ALDRVMEGKTVIAIAHRLSTIAQMDRIVVLDQGRVVEDGTHTDLLAQGGLYARYWNRQSG 604

Query: 605 GFVGI 609
           GF+G+
Sbjct: 605 GFIGL 609