Pairwise Alignments

Query, 247 a.a., RNA polymerase sigma factor for flagellar operon from Pseudomonas fluorescens FW300-N2E2

Subject, 246 a.a., RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG from Pseudomonas syringae pv. syringae B728a

 Score =  453 bits (1165), Expect = e-132
 Identities = 230/247 (93%), Positives = 240/247 (97%), Gaps = 1/247 (0%)

Query: 1   MTASGYNHLYKKSARDAQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEV 60
           MTASGY  +Y K++R++QYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEV
Sbjct: 1   MTASGYQ-MYSKTSRNSQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEV 59

Query: 61  SNKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDA 120
           S KYD++KGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDA
Sbjct: 60  STKYDSTKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDA 119

Query: 121 KDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDNASAHMEPSRDLED 180
           KDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDG+HEGLHED AS  +EPSRDLED
Sbjct: 120 KDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGDHEGLHEDGASGSLEPSRDLED 179

Query: 181 ERFQSALADAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGR 240
           ERFQ+ALADAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGR
Sbjct: 180 ERFQAALADAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGR 239

Query: 241 LGEWRAR 247
           LGEWRAR
Sbjct: 240 LGEWRAR 246