Pairwise Alignments

Query, 247 a.a., RNA polymerase sigma factor for flagellar operon from Pseudomonas fluorescens FW300-N2E2

Subject, 240 a.a., RNA polymerase sigma factor FliA from Serratia liquefaciens MT49

 Score =  207 bits (527), Expect = 2e-58
 Identities = 118/220 (53%), Positives = 143/220 (65%), Gaps = 4/220 (1%)

Query: 24  RYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSNKYDASKGASFETYAGIRIRGA 83
           RY PLV+  A  L  RLPASV+++DL+QAG IGLL    +YDA +G +F TYA  RIRGA
Sbjct: 19  RYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGA 78

Query: 84  MLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDAKDHEVAAELQLSLDDYYGILNDT 143
           MLDE+R  DW PRSV R+ R V+  +R +E + GR A + EVA  L L LD+Y  IL DT
Sbjct: 79  MLDELRSRDWVPRSVRRHAREVAQVMRQLEQRLGRPASEVEVAQTLNLPLDEYRQILLDT 138

Query: 144 LGSRLFSFDDLLQDGEHEGLHEDNASAHME--PSRDLEDERFQSALADAIANLPERERLV 201
             S+LFS+D+  +  EH    E     H E  P   L +   +  + DAI  LPERE++V
Sbjct: 139 NNSQLFSYDEWRE--EHGESAEPLLEGHEEANPLHHLLEGNLRQRVIDAIEALPEREKMV 196

Query: 202 LALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRL 241
           L LYY EELNLKEIG VL V ESRVSQLHSQ   RLR RL
Sbjct: 197 LTLYYQEELNLKEIGAVLDVGESRVSQLHSQAIKRLRSRL 236