Pairwise Alignments

Query, 247 a.a., RNA polymerase sigma factor for flagellar operon from Pseudomonas fluorescens FW300-N2E2

Subject, 239 a.a., RNA polymerase sigma factor for flagellar operon from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  207 bits (526), Expect = 2e-58
 Identities = 119/239 (49%), Positives = 154/239 (64%), Gaps = 4/239 (1%)

Query: 7   NHLYKKSARDAQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSNKYDA 66
           N LY       ++ L +RY PLV+  A  L  RLPASV+++DL+QAG IGLL   ++YDA
Sbjct: 2   NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVDRYDA 61

Query: 67  SKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDAKDHEVA 126
            +G +F TYA  RIRGAMLDE+R  DW PRSV RN R V+ A+  +E + GR+A + EVA
Sbjct: 62  LQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAMGQLEQELGRNATETEVA 121

Query: 127 AELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDNASAHME--PSRDLEDERFQ 184
             L + + +Y  +L DT  S+LFS+D+  +  EH    E     H +  P   L +   +
Sbjct: 122 ERLGIPVAEYRQMLLDTNNSQLFSYDEWRE--EHGDSIELVTEEHQQENPLHQLLEGDLR 179

Query: 185 SALADAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRLGE 243
             + DAI +LPERE+LVL LYY EELNLKEIG VL V ESRVSQLHSQ   RLR +LG+
Sbjct: 180 QRVMDAIESLPEREQLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238