Pairwise Alignments

Query, 640 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N2E2

Subject, 671 a.a., Acetoin catabolism regulatory protein from Methylophilus sp. DMC18

 Score =  335 bits (860), Expect = 3e-96
 Identities = 224/648 (34%), Positives = 336/648 (51%), Gaps = 60/648 (9%)

Query: 22  PERRIRPDR-----VIAQSWYRSVIKHRLDPSSSARLDVLCAEDIRQHQQRHQQYLDIAS 76
           P+  +R D+      IA+SW R ++K  +D  + A   ++ A+++ Q  ++++  L  A 
Sbjct: 47  PQVGLRDDQRAIAEAIARSWRRCMVKG-VDEQAPAEDQIITAQELAQRLEKNRLLLAQAE 105

Query: 77  QGVSGLARRVVPAGFAVLLSDEHGITLDARLPDQPVPYVRSGLVVGARWDESIAGTNGIG 136
             +  L+ ++      V+L+D  G+ L           +R+ L+ GA W E   GTN IG
Sbjct: 106 PEMITLSEQIAHTRSLVILTDHEGVILRTMGEGVDENQIRASLLPGASWSEEHRGTNAIG 165

Query: 137 TTLAAAEPLIIHREEHFLTSNARLSCSVAPIFNAQGLLQGCLNATCLNSNGPKESQYLTL 196
           T L     + +   EHF+  +  LSCS  PIF A   L   L+     SN     Q  TL
Sbjct: 166 TALVERLAISVQGAEHFMAYHHSLSCSAVPIFAANNHLVATLDV----SNDLNAPQQHTL 221

Query: 197 QLVILYARLIENAHFRQNYRDRLTLSLKPIDEIADLANEQLLALDDSGRVIGANHAAFVA 256
            LV + A+++EN  F       + +      E      E +   D +G++   N +    
Sbjct: 222 ALVKMAAQMVENRLFHATAEGEIAVHFHVRPEFIGTLWEGVALFDAAGQLQTINRS---- 277

Query: 257 HDQAHGPHLLGGPIEQ--------------------LLPMGVNELLRLTNGGARGLRLRA 296
                G    G P++Q                        G+N  +        G RL A
Sbjct: 278 -----GQFQFGLPLDQDSLSARRIAFEDIFDESWIAFKQRGLNTDVLFPLHLRNGARLYA 332

Query: 297 RHDEALLDLSLRIPSSDHRLAPAPAKAQRPRHPDLEQLAGDDPTLQQAVRRLHKVIDKDI 356
           R   +      + PS+  ++ P    A R     LE L   DP  + A+ ++ +V+DKDI
Sbjct: 333 RASAS------QAPSAPKKMPPL---APRESAASLELLDSGDPQFKLAITQVKQVLDKDI 383

Query: 357 AILITGETGTGKEAFARAIHQASARRDEPFIALNCAAIPESLIESELFGYRGGSFTGADK 416
            +LI GETG GKE F+RAIH ASARR +PFIA+NCAA+PE LIE+ELFGY  G++TGA +
Sbjct: 384 PVLILGETGAGKELFSRAIHDASARRHKPFIAVNCAALPEGLIEAELFGYEEGAYTGAKR 443

Query: 417 KGMKGKLELANGGTLFLDEIGDMPAHLQTRLLRVLAEREISPIGAPMPVSLDIQVICATH 476
           KG  GK++ A+GGTLFLDEIGDMP  LQ RLLRVL ER ++P+G    + ++  ++ AT+
Sbjct: 444 KGNLGKIQQADGGTLFLDEIGDMPLSLQARLLRVLQERSVTPLGGSKSIPVNFMLLSATN 503

Query: 477 QDLQGMLRDKHFREDLFYRLNGMNLSLPPLRERSDRAQLIQRLLDSQAEAKGVQLTAQAR 536
           Q L+  +    FR DL+YR+NG+++ LP LRER D A+LIQ +L  + +A    L+ +  
Sbjct: 504 QKLKDKVAAGEFRSDLYYRINGLSVQLPALRERLDMARLIQVILQIE-QAPQASLSEEVM 562

Query: 537 QCLLEASWPGNIRQLINALRYAVAMAEDGNVDVDCLPA----ELLQGDAYARLASPSVGS 592
                  WPGN+RQL N LR AVA+A+ G +    L      E+L   A A  ++  + +
Sbjct: 563 ALFNAHPWPGNVRQLHNVLRTAVALADGGVIGRQHLMQDFLDEMLAKKADAEPSAVGMAA 622

Query: 593 EPPAS-------NLLEILRRHRWNISAAAAELGVARSTLYRQMKKQRL 633
            P AS        + + + +H  NISA + +LG++R+TLYR++K   L
Sbjct: 623 LPAASLKVQNDEAIRQAMLQHGGNISAVSRQLGLSRNTLYRRLKALNL 670