Pairwise Alignments

Query, 1031 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N2E2

Subject, 1071 a.a., multidrug efflux RND transporter permease subunit from Cupriavidus basilensis FW507-4G11

 Score = 1087 bits (2810), Expect = 0.0
 Identities = 559/1029 (54%), Positives = 741/1029 (72%), Gaps = 6/1029 (0%)

Query: 1    MPQFFIDRPVFAWVVALFILLAGILAIPQLPVAQYPVVAPPQIEIYTVYPGASAQTVDES 60
            M +FFIDRP+FAWV+A+ ++LAG+ A   LP+AQYP +APP ++I   YPGASA+TV+++
Sbjct: 1    MAKFFIDRPIFAWVIAIILMLAGLAATTTLPIAQYPTIAPPAVQISATYPGASAKTVEDT 60

Query: 61   VVSLIEEELNGADNLLYFESQSS-LGSATITATFQPGTNPELAQVDVQNRLKAVESRLPQ 119
            V  +IE++++G D+LLY  S S   G+ATIT TF  GTNP++AQV VQN+L+     LPQ
Sbjct: 61   VTQVIEQQMSGLDHLLYLSSTSDDSGTATITLTFAAGTNPDIAQVQVQNKLQLATPLLPQ 120

Query: 120  AVTQQGLQVDKVSAGFLLLITLTSSDGKLDDVALSDYLARNVMNEIKRLDGVGKAQLYGA 179
            AV Q G +V K S+ FLL++   S DG +    L++Y+A  V++ + R+DGVG   L+G+
Sbjct: 121  AVQQLGTKVTKSSSSFLLILAFVSKDGSMGRYDLANYVASKVLDPVSRIDGVGTVTLFGS 180

Query: 180  ERAMRIWIDPQKLVGFNLTPADVNAAIVAQNAQVSAGSLGDLPSRHTQEITATIVVKGQL 239
            + AMRIW+D  KL  ++LTP DV +A+ AQN QV+ GSLG  PS   Q + ATI     L
Sbjct: 181  QYAMRIWLDASKLNNYSLTPIDVKSAVAAQNVQVAGGSLGGTPSVPGQMLQATITEATLL 240

Query: 240  NTPQEFADIVLKANPDGSTVRIADVARVEIGSQEYQFSTRLNGKPSTAVAVQLSPGANAL 299
             TP +F +I+LK N DGS VR+ DVAR+E+G + Y F T+ NG+P+ A  +QL+ GANAL
Sbjct: 241  QTPAQFGNILLKVNTDGSQVRLRDVARIELGGENYNFDTKYNGQPTAAFGIQLATGANAL 300

Query: 300  NTATLVRNKMDELSHYFPAGVEYKIPYDTSPFVKVSITKVIYTLGEAMLLVFAVMFLFLQ 359
             TA  VR KM +L  Y P GV  + PYD +PF+ +SI +VI TL E ++LVF VM+LFLQ
Sbjct: 301  ATAKAVRAKMADLQRYAPQGVVVEYPYDITPFITLSIEEVIKTLIEGIVLVFLVMYLFLQ 360

Query: 360  NIRYTLIPTLVVPVALMGTFATMLALGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 419
            N+R TLIPT+ VPV L+GTFA M  +GFSIN L+MFGMVLAIG+LVDDAIVVVENVER+M
Sbjct: 361  NLRATLIPTIAVPVVLLGTFAVMSVVGFSINTLSMFGMVLAIGLLVDDAIVVVENVERVM 420

Query: 420  AREGLSPKEATRKAMGQITGAIIGITLVLVAVFIPMAFMHGSVGVIYQQFSLSMATSILF 479
            A EGLSP++ATRKAM QITGA++G+ LVL AVF+P+AF  GSVG IY+QFSL++  +++ 
Sbjct: 421  AEEGLSPRDATRKAMEQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMVL 480

Query: 480  SAFLALTLTPALCATLLKPLAQGDHHAKTGFFGMFNRGFDRFGERYQGWVAYAVKRSGRY 539
            S  +AL LTPALCAT+L+P+ +G H  KTGFFG FNR F R  ++Y G V + ++RSGR+
Sbjct: 481  SVLVALILTPALCATMLEPIPKGHHDEKTGFFGWFNRTFARSQKKYHGGVEHVIRRSGRW 540

Query: 540  LLIYGVLLVGMGVLFSRLPSSFLPVEDQGYTITDIQLPPGASKNRTVQVVEQIEAH--NA 597
            L+IY ++++ +G+LF RLP +FLP EDQG     +Q P G+++ RT +V+  ++ +  N+
Sbjct: 541  LIIYLMVILVVGLLFVRLPKAFLPEEDQGTMFVLVQAPVGSTQERTAKVLLDVQEYLLNS 600

Query: 598  GEPGVGDSTIILGFSFSGSGQNAALAFTTLKDWSQR-GAEDSAASIADRANLALGQIKDA 656
             +  V     + GFSF+G GQN+ L F  LKD+SQR  A   A ++  R        KDA
Sbjct: 601  EKESVEAVLTVNGFSFAGRGQNSGLVFVRLKDFSQRESANLKAPALVRRIFGHFAGYKDA 660

Query: 657  MAFSVLPPPVDGLGTSSGFEFRLQDRGGLGHATLMQARSELLAAADKSPMLMNVRESALA 716
              F + PP +  LGT++GF+F LQDR GLGH  LMQAR+ LL  A K  +L  VR + L 
Sbjct: 661  NVFPLNPPSIPELGTAAGFDFELQDRAGLGHEKLMQARNMLLGMAAKDALLAQVRPNGLN 720

Query: 717  EAPQVQLEVDRKQANALGISFADVGSVLSTAVGSAYINDF-PNQGRMQRVVVQAEGDQRS 775
            + PQ ++++DR++ANALG+S AD+    STA  S Y+N+F     R+++V VQ E   R 
Sbjct: 721  DTPQFKVDIDREKANALGVSAADIDQTFSTAWASLYVNNFLDTDNRIKKVYVQGEPRFRM 780

Query: 776  QVEDLLKIHVRNNSGKMVPLSAFVQARWTQGPAQLTRYNGYPAVSISGEPAPGYSTGQAM 835
              EDL   +VRN +G MVP  AF    W  G  +L R+NG PAV I G  A G STGQAM
Sbjct: 781  NPEDLNAWYVRNAAGTMVPFGAFGSGAWIFGSPKLERFNGIPAVEIQGSAAAGKSTGQAM 840

Query: 836  AEIERLVALGPTGLGQEWTGLSLQERLSGSQAPILLGLSLLVVFLCLAALYESWSIPTSV 895
              +E +    P G+G EWTGLS QER SGSQAP+L G+S+LVVFLCLAALYESWSIP SV
Sbjct: 841  NAMEAIAQKLPDGIGYEWTGLSYQERQSGSQAPLLYGISILVVFLCLAALYESWSIPFSV 900

Query: 896  LLVVPLGVLGAVLAVSLRGMPNDVFFKIGLITIIGLSAKNAILIIEFAKSLYDEGHDLID 955
            ++VVPLG+LGA+LA +LRG+ NDVFF++GL+T +GLSAKNAILI+EFA+ L D+G   +D
Sbjct: 901  IMVVPLGILGALLAATLRGLENDVFFQVGLLTTVGLSAKNAILIVEFARDLRDQGMSNVD 960

Query: 956  ATLQAARLRLRPIIMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITAT-LAVVFV 1014
            A ++AARLRLRPI+MTSLAFILGV+PLA++ GA S SQ AIGTGVIGGM+TAT LA+  +
Sbjct: 961  AAVEAARLRLRPILMTSLAFILGVLPLALSNGAGSGSQHAIGTGVIGGMLTATFLAIFMI 1020

Query: 1015 PVFFVVVMK 1023
            P+FFVV+ K
Sbjct: 1021 PMFFVVIGK 1029