Pairwise Alignments

Query, 1031 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N2E2

Subject, 1049 a.a., multidrug efflux system protein from Escherichia coli BL21

 Score = 1094 bits (2829), Expect = 0.0
 Identities = 559/1035 (54%), Positives = 756/1035 (73%), Gaps = 8/1035 (0%)

Query: 1    MPQFFIDRPVFAWVVALFILLAGILAIPQLPVAQYPVVAPPQIEIYTVYPGASAQTVDES 60
            MP FFIDRP+FAWV+A+ I+LAG LAI +LPVAQYP +APP + I   YPGA A+TV ++
Sbjct: 1    MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDT 60

Query: 61   VVSLIEEELNGADNLLYFESQS-SLGSATITATFQPGTNPELAQVDVQNRLKAVESRLPQ 119
            V  +IE+ +NG DNL+Y  S S S G+  IT TF+ GT+ ++AQV VQN+L+     LPQ
Sbjct: 61   VTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQ 120

Query: 120  AVTQQGLQVDKVSAGFLLLITLTSSDGKLDDVALSDYLARNVMNEIKRLDGVGKAQLYGA 179
             V QQG+ V+K S+ FL+++ + ++DG +    +SDY+A N+ + I R  GVG  QL+G+
Sbjct: 121  EVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVGDVQLFGS 180

Query: 180  ERAMRIWIDPQKLVGFNLTPADVNAAIVAQNAQVSAGSLGDLPSRHTQEITATIVVKGQL 239
            + AMRIW++P +L  F LTP DV  AI AQNAQV+AG LG  P    Q++ A+I+ + +L
Sbjct: 181  QYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRL 240

Query: 240  NTPQEFADIVLKANPDGSTVRIADVARVEIGSQEYQFSTRLNGKPSTAVAVQLSPGANAL 299
             + +EF  I+LK N DGS V + DVA++E+G + Y      NG+P++ + ++L+ GANAL
Sbjct: 241  TSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANAL 300

Query: 300  NTATLVRNKMDELSHYFPAGVEYKIPYDTSPFVKVSITKVIYTLGEAMLLVFAVMFLFLQ 359
            +TA  +R ++ ++  +FP+G++   PYDT+PFVK+SI +V+ TL EA++LVF VM+LFLQ
Sbjct: 301  DTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQ 360

Query: 360  NIRYTLIPTLVVPVALMGTFATMLALGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 419
            N R TLIPT+ VPV L+GTFA + A GFSIN LTMFGMVLAIG+LVDDAIVVVENVER+M
Sbjct: 361  NFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420

Query: 420  AREGLSPKEATRKAMGQITGAIIGITLVLVAVFIPMAFMHGSVGVIYQQFSLSMATSILF 479
            A EGL PKEATRK+MGQI GA++GI +VL AVF+PMAF  GS G IY+QFS+++ +++  
Sbjct: 421  AEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMAL 480

Query: 480  SAFLALTLTPALCATLLKPLAQGDH-HAKTGFFGMFNRGFDRFGERYQGWVAYAVKRSGR 538
            S  +AL LTPALCAT+LKP+A+GDH   K GFFG FNR F++    Y   V   ++ +GR
Sbjct: 481  SVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTGR 540

Query: 539  YLLIYGVLLVGMGVLFSRLPSSFLPVEDQGYTITDIQLPPGASKNRTVQVVEQIEAH--N 596
            YL++Y +++VGM  LF RLPSSFLP EDQG  +T +QLP GA++ RT +V+ ++  +   
Sbjct: 541  YLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLT 600

Query: 597  AGEPGVGDSTIILGFSFSGSGQNAALAFTTLKDWSQR-GAEDSAASIADRANLALGQIKD 655
              +  V     + GF F+G GQN  +AF +LKDW+ R G E+   +I  RA  A  QIKD
Sbjct: 601  KEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKD 660

Query: 656  AMAFSVLPPPVDGLGTSSGFEFRLQDRGGLGHATLMQARSELLAAADKSP-MLMNVRESA 714
            AM F+   P +  LGT++GF+F L D+ GLGH  L QAR++LLA A K P ML +VR + 
Sbjct: 661  AMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNG 720

Query: 715  LAEAPQVQLEVDRKQANALGISFADVGSVLSTAVGSAYINDFPNQGRMQRVVVQAEGDQR 774
            L + PQ ++++D+++A ALG+S  D+ + L  A G +Y+NDF ++GR+++V V +E   R
Sbjct: 721  LEDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYR 780

Query: 775  SQVEDLLKIHVRNNSGKMVPLSAFVQARWTQGPAQLTRYNGYPAVSISGEPAPGYSTGQA 834
               +D+   +VR   G+MVP SAF  +RW  G  +L RYNG P++ I G+ APG STG+A
Sbjct: 781  MLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEA 840

Query: 835  MAEIERLVALGPTGLGQEWTGLSLQERLSGSQAPILLGLSLLVVFLCLAALYESWSIPTS 894
            M  +E+L +  PTG+G +WTG+S QERLSG+QAP L  +SL+VVFLCLAALYESWSIP S
Sbjct: 841  MELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFS 900

Query: 895  VLLVVPLGVLGAVLAVSLRGMPNDVFFKIGLITIIGLSAKNAILIIEFAKSLYD-EGHDL 953
            V+LVVPLGV+GA+LA + RG+ NDV+F++GL+T IGLSAKNAILI+EFAK L D EG  L
Sbjct: 901  VMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGL 960

Query: 954  IDATLQAARLRLRPIIMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITAT-LAVV 1012
            I+ATL A R+RLRPI+MTSLAFILGV+PL I+TGA S +Q A+GTGV+GGM+TAT LA+ 
Sbjct: 961  IEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIF 1020

Query: 1013 FVPVFFVVVMKRVRR 1027
            FVPVFFVVV +R  R
Sbjct: 1021 FVPVFFVVVRRRFSR 1035