Pairwise Alignments

Query, 444 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Xanthomonas campestris pv. campestris strain 8004

Subject, 450 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 from Pseudomonas fluorescens GW456-L13

 Score =  306 bits (783), Expect = 1e-87
 Identities = 177/430 (41%), Positives = 249/430 (57%), Gaps = 16/430 (3%)

Query: 17  ITDLSHDGRGVARRDGEGGKVTFISGALPGEVVVAEPTARSRHFDEAKTVEVLQASPQRV 76
           I  L++DGRG+A  +G   +  F+ GAL GE + A          EA+T  V +AS  R 
Sbjct: 31  IERLANDGRGIAFFEG---RTWFVIGALAGEEIEARVLGAHGKVVEARTERVFKASELRR 87

Query: 77  APRCPHFGVCAGCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQTVLPALVGDTWGYRRK 136
              C H G C GC +QHL  ++Q+  KQR+L + L R+  V P      L G  + YRR+
Sbjct: 88  PAPCAHAGRCGGCSVQHLPHNEQLALKQRMLAEQLSRVAGVEPDEWAAPLSGAEFAYRRR 147

Query: 137 GRFSVRRVEKKDKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPQLAALVEGMDGKRDIP 196
            R +VR   K  K  VGFR    + +  +  C  ++  +   + +L  ++  +   + + 
Sbjct: 148 ARVAVRWDMKAKKLEVGFRAAGSQDIVGIDDCPVLVQPLQPIMARLPEMLRRLSKPQALG 207

Query: 197 QIEFIAGDDAVALTIRHLQPLSARDEQALVEFAQAHDFAIFLQPGGVDSVHPLWPQEVP- 255
            +E  +G   +A+ +RH+ PLS  D   L EF   H+  ++L   G        PQ V  
Sbjct: 208 HVELFSGS-TLAVLLRHMAPLSDADLTILKEFCAFHEAQLWLHGDGE-------PQPVEA 259

Query: 256 ---LSFRLPKWDVELAFRPLDFIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFT 312
              L +RL +WD+ELA+RP DFIQVNA++N+ M+A AL  L    D+RVLDLFCGLGNF 
Sbjct: 260 DQSLGYRLEQWDLELAYRPGDFIQVNAAVNEAMVAQALDWLKPTADERVLDLFCGLGNFA 319

Query: 313 LPLARTVREVVGVEGDAGLVARARENAQRNGLDNAQFYAADLTQDQRQTAWMRQGFDKLL 372
           LPLA+  REVV VEG   +V RA  NA  N L NA+F+ ADL+Q      W  +GF  +L
Sbjct: 320 LPLAKAAREVVAVEGVQVMVDRAAANAASNNLHNAKFFQADLSQPLTDAEWAAEGFCAVL 379

Query: 373 LDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSLLSAGAMDMFPHT 432
           LDPPR GA +V+++L     +R+VYVSC+P +LARD   L+ +QG+ L  AG +DMFP T
Sbjct: 380 LDPPRDGAFEVVRKLRSLGAERLVYVSCNPATLARDTVELI-KQGYRLKRAGILDMFPQT 438

Query: 433 AHVESIAVFE 442
           AHVE++A+FE
Sbjct: 439 AHVEAMALFE 448