Pairwise Alignments

Query, 444 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Xanthomonas campestris pv. campestris strain 8004

Subject, 449 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pectobacterium carotovorum WPP14

 Score =  313 bits (803), Expect = 5e-90
 Identities = 176/429 (41%), Positives = 250/429 (58%), Gaps = 18/429 (4%)

Query: 17  ITDLSHDGRGVARRDGEGGKVTFISGALPGEVVVAEPTARSRHFDEAKTVEVLQASPQRV 76
           +T L   G+GVAR +G   K  F++G LPGE    + T   R F  AK   +L  SPQRV
Sbjct: 26  VTSLDPFGQGVARHEG---KTVFVTGVLPGEQAEIQLTEEKRQFSHAKLKRLLTPSPQRV 82

Query: 77  APRCPHFGVCAGCVLQHLEESQQIVAKQRVLMDNLER-IGHVTPQTVLPALVGDTWGYRR 135
            P CPHF  C GC  QH + + Q  +K   LM  + R  G   P   L  + G  + YRR
Sbjct: 83  TPPCPHFTRCGGCQQQHADIALQQSSKTAALMRLMTRETGAELPAASL--IAGTPYAYRR 140

Query: 136 KGRFSVRRVEKKDKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPQLAALVEGMDGKRDI 195
           + R ++    K+ + L+G+R+ +   + D+  C  + P++   +  L   +  +   + +
Sbjct: 141 RARLALYFQAKEQRLLMGYRQSNSHDLVDIKACPVLRPELEALLQPLRDCLSRLKAVKRL 200

Query: 196 PQIEFIAGDDAVALTIRHLQPLSARDEQALVEFAQAHDFAIFLQPGGVDSVHPLWPQEVP 255
             +E +  ++   L +RHL PL + D+QAL +FAQ    +++L P   DS+  L  +E  
Sbjct: 201 GHVELVQAENGPLLVLRHLDPLHSSDQQALRDFAQQQGVSVYLAPDA-DSLTRLQGEE-- 257

Query: 256 LSFRLPKWDVE---LAFRPLDFIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFT 312
                P + V    LAF P DFIQVN ++NQ+M+A ALA LD +P DR+LDLFCG+GNFT
Sbjct: 258 -----PVYHVAGLTLAFSPRDFIQVNDAVNQQMVAQALAWLDVQPQDRILDLFCGMGNFT 312

Query: 313 LPLARTVREVVGVEGDAGLVARARENAQRNGLDNAQFYAADLTQDQRQTAWMRQGFDKLL 372
           LPLA+    VVGVEG   LV + RENAQRNGL N  F+  +L  D  Q  W  QGFDK+L
Sbjct: 313 LPLAQRAASVVGVEGVTALVEKGRENAQRNGLSNVTFFHQNLEDDVTQQPWAAQGFDKIL 372

Query: 373 LDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSLLSAGAMDMFPHT 432
           LDP R+GA  V++Q+     +R+VYVSC+  +LARD+  L+   G+ L +   +DMFPHT
Sbjct: 373 LDPARAGAAGVMEQITRLAPERVVYVSCNATTLARDSKVLL-AAGYRLANVAMLDMFPHT 431

Query: 433 AHVESIAVF 441
            H+ES+A+F
Sbjct: 432 GHLESMALF 440