Pairwise Alignments

Query, 444 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Xanthomonas campestris pv. campestris strain 8004

Subject, 450 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Ralstonia sp. UNC404CL21Col

 Score =  365 bits (936), Expect = e-105
 Identities = 193/441 (43%), Positives = 266/441 (60%), Gaps = 14/441 (3%)

Query: 17  ITDLSHDGRGVAR---RDGEGGKVTFISGALPGEVVVAEPTARSRHFDEAKTVEVLQASP 73
           I  L  + RG+ R    DG  GKV F+ GALPGE V+         +++A  V++L+ S 
Sbjct: 9   IVSLDGEARGIGRLTNEDGSPGKVVFVEGALPGERVMYRSHRVKPSYEQASVVDILRQSA 68

Query: 74  QRVAPRCPHFGVCAGCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQTVLPALVGDTWGY 133
            RV P+C  FGVC GC +QHL+   Q+  KQRVL D+L  +  + P  V   + G  WGY
Sbjct: 69  SRVTPQCKFFGVCGGCSMQHLDSRAQVAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGY 128

Query: 134 RRKGRFSVRRVEKKDKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPQLAALVEGMDGKR 193
           R + R +VR V  K   LVGF E    +VAD++ C  + P +   +  L  LV  +   +
Sbjct: 129 RYRARLTVRHVAAKGGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIVQ 188

Query: 194 DIPQIEFIAGDDAVALTIRHLQPLSARDEQALVEFAQAHDFAIFLQPGGVDSVHPLWPQE 253
            +PQIE   G D  AL +R+L+P++A DE  L +FA  H+   +LQP G D+V+P  P +
Sbjct: 189 RMPQIELAVGQDVTALVLRNLEPITAEDEAELRDFADQHNVQFWLQPKGPDTVYPFHPLD 248

Query: 254 VPLSFRLPKWDVELAFRPLDFIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTL 313
             L++ LP++ + + F+P DF QVN  +N+ +++ AL LLDA+P DR+LDLFCG+GNFTL
Sbjct: 249 RTLTYTLPEFGITMPFKPTDFTQVNHQINRVLMSRALKLLDAQPSDRLLDLFCGIGNFTL 308

Query: 314 PLARTVREVVGVEGDAGLVARARENAQRNGLD-NAQFYAADLTQDQRQTAWMRQGFDKLL 372
           P+A   REV+G+EG   L  RA  NAQ NGLD    F   +L +           FD+ L
Sbjct: 309 PMATRAREVMGIEGSEALTTRALANAQHNGLDAKTTFACRNLFEVSADDIAALGKFDRWL 368

Query: 373 LDPPRSGAIDVLQQL-PLKQF---------KRIVYVSCHPGSLARDAGYLVNEQGFSLLS 422
           +DPPR GA+ V + L  L Q          KRIVYVSC+P +LARDAG LV+E G+ L  
Sbjct: 369 IDPPREGALAVSKALAELSQRGGEAADLLPKRIVYVSCNPATLARDAGLLVHEAGYRLAG 428

Query: 423 AGAMDMFPHTAHVESIAVFEK 443
           AG ++MFPHT+HVES+AVFE+
Sbjct: 429 AGVVNMFPHTSHVESMAVFER 449