Pairwise Alignments

Query, 849 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Xanthomonas campestris pv. campestris strain 8004

Subject, 874 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Pseudomonas fluorescens FW300-N1B4

 Score =  504 bits (1299), Expect = e-147
 Identities = 300/871 (34%), Positives = 461/871 (52%), Gaps = 42/871 (4%)

Query: 2   SLSEYRRKRSFDKTREP----EPGKLLPQGQRAIFVVQLHHASRRHYDFRLQVGDALKSW 57
           +L +Y R R F  T EP      GK   +     + +Q H AS  HYDFRL++  ALKSW
Sbjct: 4   NLDDYNRMRDFSATSEPAAVKRSGKKTAKDHALQYCIQKHDASHLHYDFRLELDGALKSW 63

Query: 58  AVPKGPSYDPAVKRMAVEVEDHPVDYASFEGEIPKGEYGGGHVAQFDHGVWATAGDPEAQ 117
           AVPKGPS DP +KR+A+ VEDHP++YA+FEG IP+G YG G V  +D GVW    DP   
Sbjct: 64  AVPKGPSLDPKIKRLAIHVEDHPLEYATFEGTIPEGHYGAGDVIVWDRGVWIPQDDPAKA 123

Query: 118 LAKGHLRFELFGSKLKGGWHLVRSSKPARQPQWLLFKEDDAYAGTLEADDLLADVAAAPA 177
            AKG L+FEL G KL G W+LVR+  P +Q QW L K  D+ A     D     VAA P 
Sbjct: 124 YAKGRLKFELKGEKLGGLWNLVRTHMPGKQEQWFLIKHQDSAA---RPDSEYDVVAAEPD 180

Query: 178 EDVRRAGAGKAQRKALTTVPVPRARARNAWTNAALKLTHARRGDIDDAAFAPQLAKLGQA 237
             +      + +  A  T P+  A A+ A    + +LT AR+  + +    P+LA L ++
Sbjct: 181 SVLSDRTILEKKHGAEKTKPIKNAPAK-ARKEKSPQLTGARKARLPE-LLKPELATLVES 238

Query: 238 PPEGAQWVHEIKWDGYRILATVTDGQVRLWSRNALEWTDKIPDIRDAIQALNLRSARLDG 297
            P G +W +EIK+DGYR++  +   +V+L++RN  +WT K+P   +A+ AL L SA LDG
Sbjct: 239 APSG-EWSYEIKFDGYRVMTRIDHDEVKLFTRNGHDWTHKLPGQAEALAALGLESAWLDG 297

Query: 298 EL-IAGRGTKEDFNLLQATLSGERQVPLALAVFDLLHIDGVEISEAPLRERKQLLQQILA 356
           E+ +A      DF  LQ          +   +FDL +++GV++ E P+ ER+  L  +L 
Sbjct: 298 EMVVANEQGVPDFQALQNAFDSGSSASIVYYLFDLPYLNGVDLREVPVEERRVALATVLK 357

Query: 357 NAPAGHLAYSSHVEGDGLEAFRVAGEQHFEGIISKRADRPYRGGRSDDWRKTKQLASQEY 416
                 L +S   +         A E   EG+I KR   PY   R+ DW K K    QE+
Sbjct: 358 LNENPLLRFSDAFDESPEALLNSACEMQMEGLIGKRLGSPYVSRRTRDWIKLKCKHRQEF 417

Query: 417 AVVGYTAPKGSRTGFGSLLLATPDPQHGWL-YVGRVGSGFSDTLMQEVTQHLHG-GGKRP 474
            VVG+T PKG+R+ FG+LLL   D   G L Y G+VG+GF++  ++ + + L     K+P
Sbjct: 418 VVVGFTDPKGARSAFGALLLGLHDRDSGELRYAGKVGTGFNEATLKRIYEQLKPLQTKKP 477

Query: 475 TAHIPTEDTDLRGATWFAPRFVVEVFYRGIGGQQLLRQASLKAVRLDKDIADLADSDMGD 534
           +   P    + +G  W  P  + EV +  +     +R A    +R DK   ++ +     
Sbjct: 478 SVVNPPSGFEAKGVHWLKPTLLAEVAFAEMTKDGSVRHAVFHGLRDDKPAEEITEELPKA 537

Query: 535 VSPAQADVADTPARGRKRANKQAPAQGEP-------------------TLSSPTKLIYPD 575
           V+ + +  A   +  + ++  + P   EP                    ++ P ++I   
Sbjct: 538 VNTSASKTAAPKSTAKNKSAAEKPDAAEPKNARSTVAPSQIGLPSGKVRITHPDRVIDAS 597

Query: 576 IRATKGDVWDYYHAVMDHLLPEIVGRPLSIIRCPNGAEKPCFFQKHHTAGLERVSSVRL- 634
              TK  +  YY +V + +LP++  RP++++R P+G     FFQK+     ER++   + 
Sbjct: 598 SGTTKMQLAQYYASVAEWILPQLKDRPVALVRAPDGIAGELFFQKN----AERLAIPGIV 653

Query: 635 ---KEETGSNAYYLVVEDAPGLLELVQFNALEFHPWGSHAARPDMADRVVFDLDPGPDVP 691
              KE TG     +++ +A  L+  VQ + +E H W + +   D  DR V DLDP P +P
Sbjct: 654 TLDKELTGQPV--MIINNAKALIGAVQMSTVELHTWNATSVDLDKPDRFVLDLDPDPALP 711

Query: 692 FAEVKRAATDIRKLLAQLELESFLRVSGGKGLHVVVPLNPGCDWELTKRFAKGFADALAQ 751
           +  +  A      +L +L L++FL+ SGGKG+H++VPL     W+  K F+      +A+
Sbjct: 712 WKSMIEATQLTLTVLDELGLKAFLKTSGGKGIHLIVPLTRKHGWDEVKDFSHAIVSHMAK 771

Query: 752 SEPDRFVATATKRFRNKRIFVDYLRNGRGATAVASYSLRGRPGAPVALPLPWSDLAKLHR 811
             PDRF A +  + R  RIF+DYLRNG GAT +  Y++R R G PV++P+   ++A+L  
Sbjct: 772 LLPDRFSAVSGPKNRIGRIFIDYLRNGLGATTICVYAVRTREGLPVSVPIFREEVAELKG 831

Query: 812 ANAFTLRDVPDKLRRRRKDPWADIAQIQQNL 842
            N + + +V ++L     +PWAD+ + +Q +
Sbjct: 832 GNQWNVHNVHERLADIGDEPWADLKKTRQTI 862