Pairwise Alignments

Query, 168 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 193 a.a., RNA polymerase sigma E factor from Pseudomonas putida KT2440

 Score = 48.1 bits (113), Expect = 8e-11
 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 13/145 (8%)

Query: 20  VSLTRNASSADDLVQSTLERAIISWADKRVEGDLRAWLFSILY---RQFLDAHRRTRRYA 76
           V    +   A D+ Q    +A  +  + R +     WL+ I     + +L +  R    +
Sbjct: 38  VRFVHDTHEAQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIAINTAKNYLVSRGRRPPDS 97

Query: 77  RM----LEFFTGR------DDAQPSVERTVIAQSTLQAFDQLNTEQRALLLWVSVEGLSY 126
            +     EF+ G       +  + S+ R  I  +  +   QL  + R  L     +GLSY
Sbjct: 98  DVSSEDAEFYDGDHGLKDLESPERSLLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSY 157

Query: 127 KEIAEILEVPIGTVMSRLSRARQAL 151
           ++IA +++ P+GTV SR+ RAR+A+
Sbjct: 158 EDIASVMQCPVGTVRSRIFRAREAI 182