Pairwise Alignments

Query, 493 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 647 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  238 bits (606), Expect = 6e-67
 Identities = 138/350 (39%), Positives = 209/350 (59%), Gaps = 2/350 (0%)

Query: 144 AVAVLILMLAMLGASQLLIRFLLSQLNTLKDVMLHVEKTGDLSARVPLACKDEVGQMASA 203
           +VA L L++ +L A+ ++ R +   L         + + GDLS  + +  +DE+GQ+  +
Sbjct: 299 SVAGLALLIGLL-AAWIMTRQITVPLQQTLSAAARIAQ-GDLSRDISVTRRDEMGQLQGS 356

Query: 204 FNAMQAGYQRVVNTVAHTARQLDDGAARLASSMNEVQHGMLGQQSETDQAATAINEMTAT 263
              M    + +V  ++    Q+   A +L++   +   G+  Q+ ETDQ ATA+NEM AT
Sbjct: 357 MQTMTVSLRELVGGISEGVSQIASAAEQLSAVTKQTCIGVTSQKDETDQVATAMNEMAAT 416

Query: 264 VHHIAQHAGATRDLSQTADTLAGSGQEVVTRVQRSIAGLSTGVQQTAVMIQKLAEDSQKI 323
           V  +A++A      +  AD  A SG EVV +    I  L+  V  +   +  L ++S KI
Sbjct: 417 VQEVARNAQEASQAAAQADQQARSGDEVVGQAITQIEQLAREVLNSTQSMSALKQESNKI 476

Query: 324 NGVVSVIHSIAEQTNLLALNAAIEAARAGEMGRGFAVVADEVRNLAKRVQSSTDEITRMV 383
            GV+ VI S+++QTNLLALNAAIEAARAGE GRGFAVVADEVR LA+R Q ST+EI  ++
Sbjct: 477 VGVLDVIKSVSQQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEIEELI 536

Query: 384 SALQAGTRDAVDFMQESSFKADDCVHQAQEAGAALAEITGAVAQMRESNTQIAVAAEQQS 443
           +ALQ GT+     +  S    D+ V  ++ AG AL +IT  VA ++  N QIA A+E+QS
Sbjct: 537 AALQTGTQQVATTLDSSRTLTDNTVELSRRAGGALEQITRTVATIQHMNEQIATASEEQS 596

Query: 444 HVAEEMNRAVVSIRDVTENTVQQTVDSATTSNQLATLAGELSKAIGQLKL 493
            VAE++NR V+S+RD++E T   +  +A +S +LA L   L   +G+ ++
Sbjct: 597 VVAEQINRNVISVRDISEQTAAASEQTAASSVELARLGTHLQTLVGKFRV 646



 Score = 34.7 bits (78), Expect = 1e-05
 Identities = 53/284 (18%), Positives = 118/284 (41%), Gaps = 22/284 (7%)

Query: 218 VAHTARQLDDGAARLASSMNEV--QHGMLGQQSETDQAATAINEMTATVHHIAQHAGATR 275
           +    ++  +  A +   +NE+  Q  +L +QS+ +     +N    T++ I +     R
Sbjct: 68  ITDRVQKTPESTALVTEKLNEMKAQLTLLHKQSDEEATIKLLNGQFETLNRIEKTFADVR 127

Query: 276 DLSQTADTLAGSGQEVVTRVQRSIAGLSTGVQQTAVMIQKLAEDSQKINGVVSVIHSIAE 335
           D  QT + +    ++   +  ++IA +   V ++    Q  +E  ++   +  +   +  
Sbjct: 128 DNRQTRNQIRTRLEQTSEQALQAIAQVEVEVLKSVSQEQDSSERMEEFTNISQLRQQV-- 185

Query: 336 QTNLLALNAAIEAARAGEMGRGFAVVADEVRNLAKRVQSSTDE----ITRMVSALQAGTR 391
           QT    +       R  +     A + + ++ + +  Q   +E    +T   +ALQ+  R
Sbjct: 186 QTARYQVQTYTFTTRDADESAAIAAIDEALKEIGQIAQDQGNESLQGLTPATAALQS-YR 244

Query: 392 DAVDFMQESSFKADDCVHQAQEAGAALAEITGAV--AQMRESNTQIAVAAEQQSHVAE-- 447
           + +   ++   KA+      +  G  L +  GA+   Q  + +++ A ++   S VA   
Sbjct: 245 ERLGEFKQIQTKAEADQEIMEGLGETLLDSVGALNHLQTAQRDSEAANSSAMLSSVAGLA 304

Query: 448 ---EMNRAVVSIRDVTENTVQQTVDSATTSNQLATLAGELSKAI 488
               +  A +  R +T   +QQT+ +A    Q     G+LS+ I
Sbjct: 305 LLIGLLAAWIMTRQITV-PLQQTLSAAARIAQ-----GDLSRDI 342