Pairwise Alignments

Query, 366 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  127 bits (318), Expect = 6e-34
 Identities = 103/362 (28%), Positives = 173/362 (47%), Gaps = 42/362 (11%)

Query: 15  VFLLAGCGHEEAAQTTIRPAMVVQPQPSSQSMDS--YPGEVRARYEPDLAFRIGGKVSKR 72
           + L+AGC      +    P + V  Q   +  D   +P    A     L+FR+ G++SK 
Sbjct: 23  LLLIAGCSEPTKLERDTLPRVKVA-QAGEKVSDKLFFPAVANAAERSHLSFRVAGEISKF 81

Query: 73  LVEEGERVKANQALAELDPQDVRLQLEATRAQVAGAEANLSLVRAERDRYKTLMDRQMVS 132
            V+EG RVK    LAE++P D RL ++        A+A  S++ ++  R + L+++ +++
Sbjct: 82  HVKEGARVKQGDILAEIEPTDYRLAVD-------NAQARFSVIDSQYRRSQPLVEKGLLA 134

Query: 133 RSQYDNSENLYRAGVARLKQI-KAEFDVASNQAGYAVLRAPQDGVVAKRVVEVGQVVSAG 191
           +SQ+D         +A  +QI +AE ++A  +  +  LRAP DG++++   E  + V  G
Sbjct: 135 KSQFDE--------IAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVG 186

Query: 192 QTVFTLATDGEREVLISLPEQGFGRFKIGQPVSVELWS-------QPDQRFTGRIRELSP 244
           Q +  +      EVLI LP+    R    QP + EL            Q +  RI+E + 
Sbjct: 187 QQIVNIHNIDSVEVLIQLPD----RLYATQPTASELAKIETVVRVPSGQVYPARIKEFTT 242

Query: 245 AADPKSRTFAARVAFTGGKVPAEL-GQSARVFI--QVDGDIPL---SVPLSALSAENG-- 296
             DP + TF   ++    +    L G +  V    Q  G  PL   S+P+ A+   +G  
Sbjct: 243 EPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDE 302

Query: 297 ----ASYVWRVQPDNTLKRTPVRIGAFGEKTVPVLEGLSPTDWVIAAGVHVLHEGQQVRP 352
               A YVW +  DNT+ +  VR+       V V EG++  D ++ AGV  L +G +V+ 
Sbjct: 303 LDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQV 362

Query: 353 VD 354
           ++
Sbjct: 363 LE 364