Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 172 a.a., FIG006045: Sigma factor, ECF subfamily from Pseudomonas fluorescens GW456-L13

 Score = 80.5 bits (197), Expect = 2e-20
 Identities = 47/160 (29%), Positives = 87/160 (54%), Gaps = 5/160 (3%)

Query: 21  RAHFLQVFLSQRSQMEALVSRRVGCRATAADLVQDLFLRFWRRPLVQ-VEELSTYLLRCA 79
           ++ F  VFL+QR+ +   + R V   +TA DL+Q+ +LR  R    + ++ L  ++ + A
Sbjct: 3   QSRFNHVFLTQRTSLLRTLERMVNNHSTAEDLLQETYLRVTRALSERAIDHLEPFVFQTA 62

Query: 80  GNIAIDHLRSEGARARSSEGWLPEQQDNQ----GSEPQAALEAGNDLRHVEAALRSLPER 135
            N+A+DHLR+    +R+    +P++  +      S  + A  A   L  +  +L  L  R
Sbjct: 63  RNLALDHLRARRIHSRTMVDDVPQEVMHSIAAATSSAEDAAHAEQLLERLNVSLSELSAR 122

Query: 136 TRQIFLLNRIHGRKYAQIAKAMGLSQSAVEKHMMRALEAC 175
            ++IF+L+R+HG  Y +IA+ + +S S V+K +   +  C
Sbjct: 123 QQRIFILSRLHGHSYQEIAEELNVSLSTVQKELKLIMSIC 162