Pairwise Alignments

Query, 277 a.a., Mobile element protein from Variovorax sp. SCN45

Subject, 269 a.a., ISSod1, transposase OrfB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  119 bits (298), Expect = 7e-32
 Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 8/233 (3%)

Query: 36  LKLMRRIDELHLELPFA-GARMLRDLLRGEGVAVGRKHMTTLMRRMGITALYR---KPNT 91
           LKL R + +L  +   + G R +   LR EG  VGR  +  +M R+ + A  R   K  T
Sbjct: 24  LKLYRLVRQLFKQSRGSLGNREMVKKLRKEGYQVGRYLVRKIMHRLRLKATQRCAYKVTT 83

Query: 92  SKKRPGRTIYPYLLRTLAITRANQVWAMDISYIPMARGFIYLAAVIDWHSRRVLAWRVSI 151
            +K         L        ANQVWA D++Y+    G++YLA V+D +SRR++ WR+  
Sbjct: 84  QRKHSDAVADNLLNMNFNPVSANQVWAGDVTYLKTGEGWMYLAVVMDLYSRRIVGWRIDK 143

Query: 152 SMDTEFCTDAVEEA--IARYGTPEIFNTDQGSQFTSSAFTGLLHDHGIRVSMDGKG-CWR 208
            M T+  + A+ +A  + +     +F++D+GSQ+TS  F  LL  +GIR SM   G CW 
Sbjct: 144 RMTTDLISKALIKAYNLRQPARGLVFHSDRGSQYTSKQFGRLLSSYGIRASMGDVGACW- 202

Query: 209 DNVFIERLWRSIKYEEVYLHAYENVSQARSGIGRYIDFYNTRRPHSSLGARTP 261
           DN  +ER + S+K++ ++  A       +  +  YI +YN  R HS+    +P
Sbjct: 203 DNAVVERFFGSLKHDWIFKVAQPTREFMKQDVTAYIKYYNLERLHSANNDLSP 255