Pairwise Alignments

Query, 296 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 406 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 53.9 bits (128), Expect = 6e-12
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 13/177 (7%)

Query: 8   FNRHRPRLQGIAYRMLGSVAEAEEVVQDAWL----RWHEAAKNTLDSAEAWLVTVVTRLS 63
           + +   R+     R+LG    AEE + DA+     RW         +  AWLV+V    +
Sbjct: 9   YRQESRRILATLIRLLGDFDLAEEAMHDAFFIAVERWQRDGIPA--NPRAWLVSVGRFKA 66

Query: 64  IDRLRAAKVQREHYIGAWMPEPTLTDASDSPATPEQLLERADNISVAFLAVLERLAPEAR 123
           ID LR    +R  +  +      L +      + E+LL   D + + F      L+ +A+
Sbjct: 67  IDALR----RRVRFDRSQADLSMLLEGQAQDPSEEELLAD-DRLRLIFTCCHPALSADAQ 121

Query: 124 AAFLLREVFDADYDEVARTLGKSEAACRQLVHRAKAQVQEGRPRFSVPR--ETHERL 178
               LREV D   +++AR   +S A   Q + RAKA++++    + VP   E  ERL
Sbjct: 122 VPLTLREVCDLTTEQIARAFLQSPATIAQRIVRAKAKIRDAGIPYQVPELSELPERL 178