Pairwise Alignments

Query, 440 a.a., Multidrug efflux system EmrAB-OMF, membrane fusion component EmrA from Variovorax sp. SCN45

Subject, 425 a.a., putative Multidrug efflux MFS membrane fusion protein from Pseudomonas putida KT2440

 Score =  164 bits (416), Expect = 4e-45
 Identities = 114/365 (31%), Positives = 188/365 (51%), Gaps = 13/365 (3%)

Query: 14  APAAPEA-PAGNGKRRRALTALAAVVIVAGGGWGLYEWLVASHYEDTDNAYVSGNVIQIT 72
           +PA  E  P+   +RR A+ A  ++  +    +  Y +    + E TD+AYV  + + ++
Sbjct: 53  SPAETEQRPSAKTRRRLAVIASGSLAAITLLAFTSYWFSTGRYLETTDDAYVRADWVALS 112

Query: 73  PQIGGTVMSINADDTDFVKAGQPLVQLDPADAKVALEQAEAALAQAVRQVRTLYANNGSL 132
           P++ G V  +   D   VKAG  LV+L   D +  L+QA A + +A   +    A+    
Sbjct: 113 PRVAGYVAKVEVADDQPVKAGDVLVRLQNRDYRARLDQARAGVTEAQAALAAAQASQQVA 172

Query: 133 AAQVTLRQSDIVKAQSDIAKA-------QDDLQRRRALSGNGAVSKEELNHAETALDTAK 185
             ++  +Q  I++A++ +  A       + D+QR R L  + A + + L  A      A+
Sbjct: 173 TERIDQQQQAILQAEAVVRSATAEQRRSELDVQRYRGLVRDDAATVQRLETASAHASQAQ 232

Query: 186 SQLAAAQAGVIAAKE--ALVSNQSLTEGTSVAQHPSVLA-AAAKVREAYLATQRVAMPAP 242
           + L  AQA +   +   A+   ++      + Q  + LA A A  + A    Q   + AP
Sbjct: 233 AALQGAQAALRQQRSQLAMAKARAAQAEAELQQRAAALARAQAHQQLAEQDEQDTVIRAP 292

Query: 243 VDGYVAKRTVQLGQRVAAGTPMMSIVPLNQLWVDANFKEVQLRNIRIDQPVKLTADVYGK 302
           + G V +R V+ GQ V  G P++++VPL Q +V AN+KE QL  +R  QPV++  D +  
Sbjct: 293 ITGVVGQRRVRTGQYVVPGQPLLAVVPLQQAYVVANYKETQLARMRPGQPVEIRVDSFAS 352

Query: 303 KVEYTGKVAGLGVGTGSAFALLPAQNATGNWIKVVQRVPVRIALDPEQLKANPLRIGLSM 362
           +  + G VA     +G+ FALLP+ NATGN+ K+VQR PVRI LD + L    +  G+S+
Sbjct: 353 QPLH-GHVASFSPASGNVFALLPSDNATGNFTKIVQRFPVRILLD-KPLDGPQVLPGMSV 410

Query: 363 DAEVD 367
            + VD
Sbjct: 411 VSTVD 415