Pairwise Alignments

Query, 495 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 534 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  139 bits (349), Expect = 3e-37
 Identities = 128/513 (24%), Positives = 224/513 (43%), Gaps = 53/513 (10%)

Query: 2   LNRRTLLTTAGATVALATPLAGMAQGRKDAIVIGMALEPPGLDPTSGAAAAIAEVVQ--Y 59
           +   T+L+   AT  LA    G A  ++  +       P G D      A   +  +  Y
Sbjct: 1   MRHTTVLSAMFATSLLAVATMGHAADKRSLVFCSEG-SPAGFDTAQYTTATDNDAAEPLY 59

Query: 60  NILETLTKINADGSVTPLLADSWEVSPDLKTYTFKLKRGVKYQNGEPF------NAAAVK 113
           N L    K   +  V P LA  W++SPD  TYTF L+ GVK+ + + F      NA  V 
Sbjct: 60  NRLVEFEK--GETGVVPALATKWDISPDGMTYTFHLREGVKFHSNKEFKPTRDFNADDVL 117

Query: 114 FSFDRAGS-----EKSTNKDKRTFANLS-------TQVVDDYTVVVINKEIDPDLPFVLG 161
           F+F+R         K+   +   F  +S        +  D +TVV+    +D      + 
Sbjct: 118 FTFNRMLDPDHPFRKAYPTEFPYFNGMSLNKNIAKVEKTDPHTVVMTLNTVDAAFIQNIA 177

Query: 162 QATAVIVEPKSAE-----GNAT----KPVGTGPYKLDNWAKGSSITLSKWEGFRSPATAK 212
            + A I+  + AE     G  +    KP+GTGP+    + K S I     + +  P+  K
Sbjct: 178 MSFAAILSAEYAEQLLKAGKPSDINQKPIGTGPFVFQRYQKDSQIRYVANKQYWDPSRVK 237

Query: 213 INKVTFRFISDTAAQAAAVLSGDIDVFPRIGTRVVPQFKMNPQFQVILAGSRAKTILSIN 272
           ++++ F   +D + +   + +G+  V        V   K +P  +++         ++ N
Sbjct: 238 LDQLIFAINTDASVRVQKLKAGECQVTLHPRPADVDALKADPNLKLLTKPGFNLGYIAYN 297

Query: 273 NRKKPLDDVRVRRAILAAIDRKAVIEGAADGFGVPIGSHYVPGAAGYVDTTGINPFDIEK 332
            R KP D + VR+A+  A+++++++     G G    +   P    Y D+     ++ EK
Sbjct: 298 VRHKPFDQLEVRQALDMAVNKQSILNAVYQGAGQLAVNAMPPTQWSYDDSIKDAAYNPEK 357

Query: 333 AKKLLAEAGVKTPLELKMTLPP-----PPYARQGGEVIVAELAKIGIVVKVQNVEWAQWL 387
           AK+LL  AGVK   E+ +   P      P A+   E++ ++ AKIG+ VK+ + EW +++
Sbjct: 358 AKELLKAAGVKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGLKVKIVSYEWGEYI 417

Query: 388 SGTYGNKDYDLSIVSHV-EPFDLGNYAKSDY---------YWGYQSKAFDTLFDKIKTTA 437
             T  N ++D+S++    +  D  N+  + Y         Y  +   A+D L  + K   
Sbjct: 418 KRT-KNGEHDVSLIGWTGDNGDPDNWLGTLYSCDAIGGNNYSMWCDPAYDKLIKQAKVVT 476

Query: 438 NTAERNKLLGDAQKML-----ATDAANGFLYQP 465
           +  +R  L   AQ++L      T  A+  + QP
Sbjct: 477 DREQRTVLYKQAQQLLKQQVPITPVAHSTVNQP 509