Pairwise Alignments

Query, 636 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 653 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Variovorax sp. SCN45

 Score = 94.7 bits (234), Expect = 1e-23
 Identities = 90/440 (20%), Positives = 186/440 (42%), Gaps = 19/440 (4%)

Query: 214 KMSEQVEKAFKAQAKEAQQLRERAYLDPVSHLGNRAYYMSQLSGWLSESGIGG------- 266
           ++S  +E+A     +   +L++RA+ D ++ L NR  +  +L   L+             
Sbjct: 197 RLSSSLEEANAELTQANHELQKRAFTDALTGLPNRVLFEDRLRHALARMNRANQLQVEEC 256

Query: 267 --VAILQAEFIKELYEEKGYEAGDGMVRELADRLKNSITIKDISIARISTYEFGIIMPNM 324
             V  +  +  K + +  G+ AGD ++   A+RL  +    D ++ARI   EF +++  +
Sbjct: 257 IAVLFVDLDGFKPINDSFGHSAGDRILCVAAERLARNTRESD-TVARIGGDEFLLLLEGV 315

Query: 325 -DETELKIVAESIITCVDDINPDPTGMAKANLSLGVVSNKRQSSTTTLLSLLDNALAKAK 383
            D  E    A  ++  + +       + +   S+G+V +  Q     L++  D A+ +AK
Sbjct: 316 HDRAECAEAANRVLRALGEPFNVQGKLLQIACSIGIVLHPEQGEPDKLVANADAAMYEAK 375

Query: 384 SNPELNYGFISSDTDKIILGKQQWKTLVEEAIHNDWFTFRYQAANSSWGKTF---HREVF 440
                NY    S        + Q ++ +  A+    F   YQ   +  G +       V 
Sbjct: 376 RAGGGNYVMFESHMGADAAKQLQLQSDLRRAVELKQFELYYQPKINGVGDSISGVEALVR 435

Query: 441 SAFEKDGVRYTANQFLFALEQLNASHIFDQYVIERVIQQLEKGELTDP---LAINIAQGS 497
               + G+     +F+   E+         ++++   +Q+ + +       +A+N++   
Sbjct: 436 WNHPQHGL-IGPTEFIGLAERFGLIVHLGDWILDEACRQIAQWQAQGTQMCVAVNLSVMQ 494

Query: 498 ISQPSFIRWISQTLSKHLSVANLLHFEIPEGCFVNEPHYTALFCNAVRNAGADFGVDNYG 557
           + +  F+  + + L +H   A+LL  EI E   + +   T      +   G    +D++G
Sbjct: 495 LREVDFVARVERALLRHNVPASLLLCEITESVAMEDIKATQRTLEGLARVGVFLSIDDFG 554

Query: 558 RNFQSLDYINEFRPKYVKLDYLFTHHLDD-ERQKFTLTSISRTAHNLGITTIASRVETQT 616
             + SL ++ +   + VK+D  F   L   E  +  + ++ R AH LG++ +A  VE + 
Sbjct: 555 TGYSSLSHLRKLPARQVKIDRSFVQDLQTKEDARAVIDAVIRLAHALGLSVVAEGVENEA 614

Query: 617 QLDFLSEHFIEVFQGFIVDK 636
           Q D L     +  QGF+  +
Sbjct: 615 QRDILLAMGCDELQGFLFSR 634