Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 290 a.a., tyrosine recombinase XerD (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  102 bits (255), Expect = 9e-27
 Identities = 96/308 (31%), Positives = 143/308 (46%), Gaps = 65/308 (21%)

Query: 16  RYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGK-VATKTQSLALNS 74
           R  A+ T+ AY   +  +  F  +    L    E   FL  + ++ + + ++T S  L++
Sbjct: 12  RGLAENTLAAYAADLADFAGFLAQGGIDLEAATEQTLFLYIVDLRRRGLTSRTLSRHLSA 71

Query: 75  LSFLYKE-ILKTPLSLE-IRF-QRSQLERKLPVVLTRDEIRRLLEIVDPKHQLP------ 125
           L  L+   + +  L+ + +R+ +  +L R LP VLTRDE+  +L   D   +L       
Sbjct: 72  LRGLFAHGVAQGQLAADPLRYLENPKLPRTLPDVLTRDEMAAVLARPDLSDRLGFRDRTM 131

Query: 126 IKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTV----TLAKELYPHLKEQI 181
           ++LLY SGLR+ E   LR  D D   G +R++ GKG K R V    T AK L  ++++  
Sbjct: 132 LELLYASGLRVSELCGLRPLDFDPMTGLVRVF-GKGSKERIVPVHDTAAKLLSAYIRD-- 188

Query: 182 ALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHH 241
                              W P             FR             P  D +  + 
Sbjct: 189 -------------------WRPA------------FR-------------PVEDALFLNR 204

Query: 242 ----MNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297
               +    + K V+R   EAGI K ++ HT RHSFATHLL+ GAD+RTVQ  LGH D+ 
Sbjct: 205 SGKGLTRQAVWKVVKRHVAEAGIRKDISPHTFRHSFATHLLDGGADLRTVQMLLGHADIA 264

Query: 298 TTQIYTHV 305
            T+IYTHV
Sbjct: 265 ATEIYTHV 272