Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 517 a.a., ATP-dependent RNA helicase from Caulobacter crescentus NA1000

 Score =  292 bits (748), Expect = 2e-83
 Identities = 157/349 (44%), Positives = 220/349 (63%), Gaps = 4/349 (1%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           FT LGLS   L+A+ + GY T +PIQ QAIP  LAG+DV+  AQTGTGKTA FTLP+++ 
Sbjct: 4   FTDLGLSPTTLQAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDR 63

Query: 63  LAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122
           L  G + +A   RAL++ PTRELA Q+  +   Y +   L  A++ GGV    Q +++ +
Sbjct: 64  LQSG-RAKARMPRALVIAPTRELADQVAASFEKYAKGTKLSWALLIGGVSFGDQEKKLDR 122

Query: 123 GADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNL 182
           G D+L+ATPGRL+D + +  +    ++ LV+DEADRMLDMGFI DI +I K+ P K+Q L
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTL 182

Query: 183 LFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIY---PADVKKKPDMLVKLVK 239
            FSAT   EI  L K  + +PV I V+   +T   + Q +     +D K K   L  L++
Sbjct: 183 FFSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLVKVPSSDPKAKRLALRALIE 242

Query: 240 EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVA 299
           +   +  +VF   K   + +A  L   G  AA IHG+  Q  R + LADF++G ++ILVA
Sbjct: 243 KAGIETGIVFCNRKTEVDIVAKSLKVHGYDAAPIHGDLDQTQRMKTLADFRSGALKILVA 302

Query: 300 TDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVS 348
           +D+AARG+DIP +  V N+++P  A+DYVHRIGRTGRAG  G    LV+
Sbjct: 303 SDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRTGITYMLVT 351