Pairwise Alignments

Query, 469 a.a., deoxyribodipyrimidine photo-lyase from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., deoxyribodipyrimidine photolyase from Pseudomonas fluorescens FW300-N2E3

 Score =  376 bits (966), Expect = e-109
 Identities = 209/476 (43%), Positives = 279/476 (58%), Gaps = 19/476 (3%)

Query: 1   MRLVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQ 60
           ++L+W R DLR  DNTAL+AA   G P  A+Y+ +P+QWH H  AP + D   R L EL 
Sbjct: 8   LQLIWLRSDLRLHDNTALSAAAARG-PCVAVYLLSPQQWHAHDDAPCKVDFWLRNLLELS 66

Query: 61  QELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLSE 120
             L  LN+PL  +  A +  A   + QL   LN   V  N +Y ++E +RD    + L  
Sbjct: 67  HALGELNIPLLIRTAARWDDAPQVLGQLCTELNVEAVHVNEEYGVNESRRDAAVSKTLDA 126

Query: 121 QGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQ---PPVI---GKNRPVAL 174
            GI + ++ D+ +L PGSV TK G +F+VF+ F++A  T  Q   P +I   G   P A+
Sbjct: 127 AGIGFYSYLDQLLLKPGSVLTKTGTYFQVFSQFRKACYTRLQVALPRLIAAPGVQMPTAI 186

Query: 175 WNVPSALAELVWHPEQAFDYPRID-STPWAADFETVRAQLRDFCRERVQDYHQARDFPAR 233
              P  L        + FD P       W A       +L  F + ++ DY + RDFPA+
Sbjct: 187 NRDPIPLQV------EGFDTPSEHLRVLWPAGEGEAHRRLEHFAQGQIDDYKEQRDFPAK 240

Query: 234 EGTSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQ---VWLSELIWREFYQHLVAIE 290
            GTS LS YLA GV+S RQC+     +S+ GE   G+     W++EL+WREFY+H++   
Sbjct: 241 PGTSQLSAYLAAGVISPRQCLHAAV-QSNQGEFESGSVGVITWINELLWREFYKHILVGY 299

Query: 291 PNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVA 350
           P +S+ R F      L W +  ++   W E +TG PI+DAAMRQL +TGWMHNRLRM+VA
Sbjct: 300 PRVSRHRAFRPETEALAWRDAPDELAAWKEARTGLPIIDAAMRQLLETGWMHNRLRMLVA 359

Query: 351 SFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKF 410
            FLTK+L IDWR GER+FM  LIDGD AANNGGWQW ASTG D  P+FRIFNP+SQ EKF
Sbjct: 360 MFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDSAPWFRIFNPLSQSEKF 419

Query: 411 DPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVL-YPARLVDHKQEREVTLRLYK 465
           D  G FI+ W+PEL  +++  IH P     +  V  YP  +V+  Q RE  L  +K
Sbjct: 420 DAEGLFIKHWLPELAGLNNKSIHNPAAMGGLFGVADYPLPIVNLGQSRERALAAFK 475