Pairwise Alignments

Query, 469 a.a., deoxyribodipyrimidine photo-lyase from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., deoxyribodipyrimidine photolyase from Caulobacter crescentus NA1000 Δfur

 Score =  278 bits (712), Expect = 2e-79
 Identities = 181/485 (37%), Positives = 242/485 (49%), Gaps = 45/485 (9%)

Query: 3   LVWFRRDLRSFDNTALTAALNSGDPVAAMYIA--TPEQWHQHHLAPIQADLIW---RRLA 57
           +VWFR+DLR  DN AL  A  SG PV  +YI   TP       + P+    +W   + L 
Sbjct: 18  IVWFRKDLRIADNPALRHAAQSGRPVIPLYILDETPG------IRPMGGASLWWLDKSLK 71

Query: 58  ELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQL 117
            L   L  L   L  ++      AA  + QL     A  V+ NR Y+     RD   +  
Sbjct: 72  SLAASLETLGTKLVLRK----GVAAEVLDQLIAQSGARSVVWNRLYDKPSTDRDAAIKAA 127

Query: 118 LSEQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRA---WLT----------LFQPP 164
           L ++G+   +F+   +  P +V+    + +KVFTP+ RA    LT          L  P 
Sbjct: 128 LRDRGVDCQSFNAGLLNEPWTVKNGSDQPYKVFTPYWRAAREHLTDVAVTAAPGHLVAPA 187

Query: 165 VIGKNRPVALWNVPSALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLRDFCRERVQDY 224
               +  +A WN+     +  W   + FD        W        A+L  F +  ++ Y
Sbjct: 188 RFPASESLASWNLHPTKPD--W--SKGFDL-------WTPGEAGAHARLDAFLKGPIKGY 236

Query: 225 HQARDFPAREGTSSLSPYLAIGVLSARQCVARLYHESSMGELSEG-AQVWLSELIWREFY 283
              RD P  E TS LSP+L  G +  RQ        +  G++    A  +LSE+ WREF 
Sbjct: 237 GDQRDIPGVEATSKLSPHLHFGEIGPRQVWLATRSAADQGDIPLAEADKFLSEIGWREFN 296

Query: 284 QHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHN 343
             ++   P++  +    E+     W  D    + W  G+TGYPIVDA MR+L  TG+MHN
Sbjct: 297 HSILYNWPHMPSANFKPEFDG-FPWVKDEGALEAWKRGQTGYPIVDAGMRELWTTGFMHN 355

Query: 344 RLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNP 403
           R+RMIVASFL K L IDWR GE +F   L+D D A N G WQW A +G D  PYFRIFNP
Sbjct: 356 RVRMIVASFLIKHLMIDWREGEAWFWDTLLDADLANNVGNWQWTAGSGADAAPYFRIFNP 415

Query: 404 VSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWT----YPAVNSVLYPARLVDHKQEREV 459
           ++QGEKFDP GD++RRWVPELR+VS   IH+PWT     PA    LY   +VDH   R  
Sbjct: 416 IAQGEKFDPKGDYVRRWVPELRNVSDDVIHKPWTKPLHLPAGAKRLYSRPIVDHAMARAR 475

Query: 460 TLRLY 464
            L  Y
Sbjct: 476 ALEAY 480