Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., type IV pilin biogenesis protein from Klebsiella michiganensis M5al

 Score =  144 bits (364), Expect = 4e-39
 Identities = 97/405 (23%), Positives = 193/405 (47%), Gaps = 17/405 (4%)

Query: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAA--RSRSQGFAFKR 61
           + ++ +  +G   +G +  DN  +  Q L++Q ++P+ +    V+ A    R  G     
Sbjct: 7   WRWRGITLQGAPCQGTLWQDNRPEALQVLQQQRIIPLTLRRCSVQNALWHPRYSGE---- 62

Query: 62  GISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDS 121
                    I RQLA L+Q+G+PL E L  +A+Q    + + +L  +   + +G +LS S
Sbjct: 63  ---------IIRQLAALLQAGLPLAEGLELLAQQQPNAQWQALLQTLAEDLAQGISLSGS 113

Query: 122 LGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 181
           L  +P  F  L+ +M+  GE +G L+     LA     +  +  K+++A+ YP++++  A
Sbjct: 114 LEKWPEAFPPLYLAMIRTGELTGKLELCCAELAQQQREQLLLTEKVKKALRYPLIILTLA 173

Query: 182 VGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFL-QHWGISLLVGLLMLIYLVR 240
           + +V  +L  V+P+    +      LP  T+ ++   + L + W +   +G+L  I L R
Sbjct: 174 LLVVMGMLCFVLPEFAAIYQTFNTPLPWLTRVVMSVGEGLTRFWPLLAALGILPAI-LNR 232

Query: 241 WLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMT 300
            +  +P   L   + + +LPV GK+  G   ++    L++  S+ I  L G++   + + 
Sbjct: 233 LICQRPGWLLYRQKLLHTLPVFGKLLCGQRLSQIFTVLALTQSAGISFLQGLQSVEETLN 292

Query: 301 NQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQD 360
               +Q++      +  G  + +AL  +  F P+ L +I +GE SG L+ ML   A +  
Sbjct: 293 CPLWRQRLRQVCRQITHGDPIWQALANSGGFTPLCLQLIRTGEASGSLDTMLANLARHHS 352

Query: 361 NSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405
                  +    +  P ++ +   +V  +V+A  +PI  + + +S
Sbjct: 353 EQTHQQADNLATLLEPMMLVVTGTIVGVLVVAMYLPIFHLGDAIS 397