Pairwise Alignments

Query, 312 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1000 a.a., diguanylate cyclase with PAS/PAC and GAF sensors (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 99.0 bits (245), Expect = 4e-25
 Identities = 62/179 (34%), Positives = 91/179 (50%), Gaps = 5/179 (2%)

Query: 139 RNIHDYKISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETL-----LGLIIFDIDHFK 193
           R+I D K       R++  DPLT ++NRR FF  +E      +     L +++ D+D FK
Sbjct: 799 RDITDRKRLEQALMREATTDPLTGIRNRRQFFVDAEREMGRAVRYGRPLAVLMLDLDRFK 858

Query: 194 QINDTYGHPAGDYVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIR 253
           ++ND +GH AGD VL       +Q L       R GGEEF       D+ + +  AE +R
Sbjct: 859 RVNDRFGHHAGDAVLMGCVQACQQALRETDILGRLGGEEFAAVLLETDLDDALAAAERLR 918

Query: 254 DYVESHTLMWQGQQIALTLSAGCTMGAMMSHNWDNLLHTADQALLSAKRLGRNRVIADR 312
             VE   + + GQ++  T+S G  +        D++L  AD AL +AK  GRNRV+  R
Sbjct: 919 RAVEEMDVPFSGQRLRCTVSIGLALRGPGDGALDDILRRADSALYAAKEAGRNRVMLAR 977