Pairwise Alignments

Query, 238 a.a., two-component system response regulator ArcA from Vibrio cholerae E7946 ATCC 55056

Subject, 241 a.a., DNA-binding response regulator from Pseudomonas putida KT2440

 Score =  141 bits (356), Expect = 1e-38
 Identities = 80/228 (35%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 6   ILIVEDEQVTRNTLKSIFEAEGYAVFEASNGEEMHQVLSDYPINLVIMDINLPGKNGLLL 65
           IL+V+D+Q  R  L++     G+ V   ++G+     L   P +LVI+D+ LP ++G  L
Sbjct: 8   ILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGFSL 67

Query: 66  ARELRE---QADVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRSM 122
            R +R+   QA V ++ LT   +E D+++GLE+GADDY+ KPF+PREL  R + LL R+ 
Sbjct: 68  CRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRRTE 127

Query: 123 HAGTTQEEKRSVEKYVFNGWELDINSRSLVSPDGDSYKLPRSEFRALLHFCENPGKIQTR 182
              T            F+ W LD  S  L   DG+   L  ++F  L  F ++P +I  R
Sbjct: 128 FGQTAPGN----AVLAFDDWRLDTVSHRLFHRDGEEVILSGADFALLKLFLDHPQQILDR 183

Query: 183 ADLLKKMTGRELKPHDRTVDVTIRRIRKHFESVSGTPEIIATIHGEGY 230
             +     GRE  P DR VD+ + R+R+        P +I T+ G GY
Sbjct: 184 DTIGNATRGREPMPLDRIVDMAVSRLRQRLRDTDKPPRLIRTVRGSGY 231