Pairwise Alignments

Query, 451 a.a., sodium-dependent transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., sodium-dependent transporter, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  401 bits (1030), Expect = e-116
 Identities = 200/450 (44%), Positives = 285/450 (63%), Gaps = 1/450 (0%)

Query: 2   AQSNSRETFSSRLGFILAAAGAAVGLGNIWGFPTQAASNGGGAFLLVYLILIFVVAFPML 61
           A +NS   FSSRLGFI+AAAG+AVG+GNIWGFPTQAA++GGGAFLLVYL+LIF++  PML
Sbjct: 4   ANTNSTNHFSSRLGFIMAAAGSAVGVGNIWGFPTQAATHGGGAFLLVYLVLIFILGIPML 63

Query: 62  VVEMAIGRYGQANPVDSMRSLTSQPAAKKVGGFVGWVGLSVPSAVLAFYSIVGGWIICFL 121
           + E+ IGR+GQ NP D+M  L      + +G  +G + +     +  FYSI+ GW + F 
Sbjct: 64  MAELMIGRHGQTNPADAMGKLGCNSLTRSLGKTIGLISIVTAGLIYTFYSILSGWFVSFA 123

Query: 122 LGAMTDLFGFTAASAWLKGFSVERNLFGTLIFYVLTILIVQGGVKQGIERWSTRLMPALF 181
           +  +   FG    +AWL  FS+ RNL  TLIF  L  L++  GV++GIE+WS RLMP L 
Sbjct: 124 IAPIATAFGSNDTAAWLMDFSLSRNLVFTLIFSTLVFLVLLQGVQEGIEKWSKRLMPLLL 183

Query: 182 VLFAVLFIYIMTQQGAWEGLKHYLIPDFEKVWDRKLILAAMGQGFFSLTIGGCSMLIYGS 241
           ++      YI +  GA EG+   L P+F K      ++ A+GQ FFSLTIG  +M++YGS
Sbjct: 184 IMLIAGVAYIFSLNGASEGISALLTPNFAKAIAPDTLINALGQTFFSLTIGTGAMMVYGS 243

Query: 242 YLSKKENLPKMAMSVTLVDTAVAFIAGLVVLPAMFVAMNKGVQIYAQDGSLLSSDTLVFT 301
           YLS+KEN+ K+ + V   D+ +AF+A  +++PAM+VA + GVQI++ +G L+ SD LVFT
Sbjct: 244 YLSQKENIAKLTVWVAFTDSGIAFLAAFLIIPAMYVAQHNGVQIFSPEGKLIDSDALVFT 303

Query: 302 VLPLMFDSLG-LLGQIFAMVFFLLLTIAALTSSISMLECPVALVGERFNTRRTPTSWVLG 360
           VLP +F +LG     I ++VFF+LL IA LTS+IS+ E P + V ++    R   + ++G
Sbjct: 304 VLPALFSTLGDTANLIISVVFFMLLIIAGLTSAISIAEVPTSYVMQKCGFSRQRATLIIG 363

Query: 361 GLIALFSVVIVYNFGALFGLVATLATQYLQPTAALMFCLFGGWVWQRDAKMKELQAGFPE 420
            L+   S+++   F  LF     L TQ  QP  AL   ++ GW+W++   +K +      
Sbjct: 364 LLLTALSLLLAVFFETLFSFTIMLTTQMTQPLVALGIAIYLGWIWRQSQLLKAISKQEGV 423

Query: 421 LQQSLFGKIWPWYVKFVCPVLVATVIWASF 450
               LF +IWP YVK+VCPVL+  +    F
Sbjct: 424 DATGLFWRIWPRYVKYVCPVLIIAIAIRQF 453