Pairwise Alignments

Query, 349 a.a., flagellar motor switch protein FliM from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  506 bits (1302), Expect = e-148
 Identities = 240/329 (72%), Positives = 293/329 (89%), Gaps = 1/329 (0%)

Query: 1   MTDLLSQDEIDALLHGVDSVDEEEEELPKSGPSATNFDFSSQDRIVRGRMPTLELINERF 60
           M+DLLSQDEIDALLHGVD V EE+ EL   G  A ++DFSSQDRIVRGRMPTLE++NERF
Sbjct: 1   MSDLLSQDEIDALLHGVDDV-EEDNELDAVGQEARSYDFSSQDRIVRGRMPTLEIVNERF 59

Query: 61  ARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEAR 120
           ARHLRIS+FNM+R+ AEVSINGVQM+KFGEY +TL+VPTSLNMVRF PLKGTAL+TMEAR
Sbjct: 60  ARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEAR 119

Query: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVEFEYLD 180
           LVFILV+NFFGGDGR+HA+IEGREFTPTERR++QLLLKI+F DYK+AW+PVM VEF+YLD
Sbjct: 120 LVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYLD 179

Query: 181 SEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMET 240
           SEVNP+MANIVSPTEV+V++SFH+EVDGGGGDFH+ MPYSM+EPIRELLDAGVQSDK +T
Sbjct: 180 SEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDT 239

Query: 241 DVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEHAVMFVEELPTY 300
           D+RWS AL +EIMDV V F   ++E ++ L+D+M  + GD+IPI++PE+ +M +E+LPTY
Sbjct: 240 DMRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPEYIMMRIEDLPTY 299

Query: 301 RVKMGRSGEKLAVQVSEKIKRPDVVKTDL 329
           R KMGRS + LA+++ EKI RP+ VK++L
Sbjct: 300 RCKMGRSRDNLALKIYEKIPRPETVKSEL 328