Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 309 a.a., Histone deacetylase superfamily (NCBI) from Rhodospirillum rubrum S1H

 Score = 76.3 bits (186), Expect = 9e-19
 Identities = 65/228 (28%), Positives = 97/228 (42%), Gaps = 36/228 (15%)

Query: 95  ERTLYSVGGTCLTVEQALQSGV-----AIHLSGGYHHAHADFGSGFCLFNDLAIAAHFAL 149
           E  L + GG    V+  +   V     A+   G  HHA      GFCLFN+ AI A+ A 
Sbjct: 91  EAALRAAGGMVQAVDAVMDKSVRNAFVAVRPPG--HHAELATAMGFCLFNNAAIGAYHAR 148

Query: 150 SLPSVDKVLIIDSDVHHGDGTATLCAERDEIITLSFHCDKNFPARKPASSMDVGYANQTG 209
           +    ++V +ID DVHHG+GT  +  +   +   S H   +FP        + G+ ++TG
Sbjct: 149 ARWGAERVAVIDWDVHHGNGTQHIFWDDPAMFYASTHEAHSFP--------NTGFVDETG 200

Query: 210 DE---------------EFLSTFIQVVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQ 254
                             F   F + +  A+    PDLI+  AG D H  D +  L++  
Sbjct: 201 GHGNIVNCPLRSGADGLRFREAFTERITPALRAFAPDLIIISAGFDAHVMDPMANLNLKV 260

Query: 255 AAIAQRDRFMLGLAKQE-SIPIACVIGGGYREDHTAL---VPLHLELL 298
           A        +L +A       +  V+ GGY  D TAL   V  H++ L
Sbjct: 261 ADFVWATEQVLDVANDVCDSRVVSVLEGGY--DLTALASCVSAHVKTL 306