Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 316 a.a., LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) from Sphingobium sp. HT1-2

 Score =  135 bits (340), Expect = 1e-36
 Identities = 95/315 (30%), Positives = 162/315 (51%), Gaps = 27/315 (8%)

Query: 13  IDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVRVPPVT 72
           I E  AG R+D  L   L ++ +  +  ++ +G++    + +    K+  G    +    
Sbjct: 12  IGEAQAGLRLDRALAELLPDLSRERIKALIVEGQIVSGGRSLNPSMKVAVGQDYSI---- 67

Query: 73  VEVKENEPAPPSTKLSKVAE-LEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAIE---- 127
                  PAP +  L  VA+ +   IV+ED  L++++KP+G  VH  +G   G +     
Sbjct: 68  -----TLPAPVA--LDAVAQDIPLDIVHEDADLIVVDKPAGLVVHPAAGNLDGTLVNALL 120

Query: 128 -----ALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALV 182
                 L  +   AR   +VHRID+DTSG+L+VAK   A   L  QF++ ++ + Y A+V
Sbjct: 121 HHCDGQLSGIGGVAR-PGIVHRIDKDTSGLLVVAKSDKAHEGLARQFKDHSIDRLYAAIV 179

Query: 183 MGHWDAECKVVNAPLLKNEVNS---IVRVNPNGKPSETRFRILEKFAEATLVQASPVTGR 239
            G        V+A + +++ +     V     GK + T +R++E+   A +V+    TGR
Sbjct: 180 YGIPAPGSGTVDAWIGRSDADRKKMAVHREGRGKHAVTHYRVMERLRGAAMVECRLETGR 239

Query: 240 THQIRVHTQYMGHPIAWDDRYG-DRR-FDAYTAQFGIERLFLHAANIQFVHPASEKKLEI 297
           THQ+RVH  ++GHP+  D  YG DR+ F +     G +R  LHA  + F+HP +E+ L  
Sbjct: 240 THQVRVHMAHLGHPLIGDPVYGRDRKGFKSILETLGFKRQALHAKRLGFIHPVTEEPLAF 299

Query: 298 HAPLEAHLEQALTKM 312
            +PL A +++ L+++
Sbjct: 300 DSPLPADMQELLSEL 314