Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) from Sphingobium sp. HT1-2

 Score =  141 bits (355), Expect = 3e-38
 Identities = 88/307 (28%), Positives = 158/307 (51%), Gaps = 14/307 (4%)

Query: 13  IDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVRVPPVT 72
           +  D  G R+D + +  L ++  ++V R  R G++RV+  R     ++  G ++RVPP  
Sbjct: 98  VQADDDGIRLDRWFQRHLPDVGFNIVSRWSRTGQLRVDGARAAPGDRIAEGQMIRVPPAE 157

Query: 73  VEVKENEPAPPSTKL-----SKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAIE 127
            +V   +  P   ++      ++A ++  +++ D   +++NKP G A  GG+        
Sbjct: 158 PKVAAADK-PKRVRVIDLTEDEIAYVQDMVIHRDKQAIVINKPPGLATQGGTKTDEHVDR 216

Query: 128 ALRALRPQARFL-ELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHW 186
            L  L   A    +LVHR+D+DTSG LL+A+   +  H    F  +T +K Y+A+V+G  
Sbjct: 217 LLDGLIFDAESRPKLVHRLDKDTSGALLLARSSRSAAHFAKAFSSRTARKVYWAIVIGVP 276

Query: 187 DAECKVVNAPLLKNEVNSIVRVN---PNGKPSETRFRILEKFA-EATLVQASPVTGRTHQ 242
             +  ++  P+ K       +++     G P+ TR+R++E+    A  V+  P TGRTHQ
Sbjct: 277 SIDDGMIELPITKQPGTGGEKMHVDEEEGLPARTRYRVIERAGNRAAWVELQPYTGRTHQ 336

Query: 243 IRVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPLE 302
           +RVH   +GHP+  D +YG +  D++ +     ++ LHA  I+  HP    ++++ A L 
Sbjct: 337 LRVHMAAIGHPLVGDGKYGGK--DSFLSGSISRKMHLHARRIRVDHP-DGGRIDMKAELP 393

Query: 303 AHLEQAL 309
            H   +L
Sbjct: 394 EHFLNSL 400