Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 773 a.a., putative transcriptional accessory protein from Escherichia coli BL21

 Score = 64.7 bits (156), Expect = 1e-14
 Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 1/78 (1%)

Query: 184 ELLETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEIL 242
           E +  LQ G  ++G V N+T++GAFVD+G   DGL+HI+ ++ K V+ P  +V  GD + 
Sbjct: 643 ETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVK 702

Query: 243 VKVLKFDRDRTRVSLGLK 260
           VKVL+ D  R R++L ++
Sbjct: 703 VKVLEVDLQRKRIALTMR 720



 Score = 58.5 bits (140), Expect = 9e-13
 Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 3/72 (4%)

Query: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIH-PSKVVNVGDEVEVMVLDI 335
           G  L G VTN+T++G FV+I    +GLVH+S +  +NK +  P  VV  GD V+V VL++
Sbjct: 651 GMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL--SNKFVEDPHTVVKAGDIVKVKVLEV 708

Query: 336 DEERRRISLGLK 347
           D +R+RI+L ++
Sbjct: 709 DLQRKRIALTMR 720



 Score = 45.1 bits (105), Expect = 1e-08
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 369 GKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERER 428
           G + ++T+FG F+ +    DGLVH+S +S N   E+     K GD +   VL VD +R+R
Sbjct: 656 GAVTNVTNFGAFVDIGVHQDGLVHISSLS-NKFVEDPHTVVKAGDIVKVKVLEVDLQRKR 714

Query: 429 ISLGIK 434
           I+L ++
Sbjct: 715 IALTMR 720



 Score = 41.6 bits (96), Expect = 1e-07
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 15/127 (11%)

Query: 445 VSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAK 504
           ++D + G ++ G VT V   GA +++    +G +  S +S   +ED   ++  GD V+ K
Sbjct: 645 MNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVK 704

Query: 505 FTGVDRKNRVINLSIKAKDEAEE---------------QEVMATLNKQDEAAFGNAMADA 549
              VD + + I L+++   +  E               +       ++ + A  +AM DA
Sbjct: 705 VLEVDLQRKRIALTMRLDVQPGETNARRGGGNERPQNNRPAAKPRGREAQPAGNSAMMDA 764

Query: 550 FKAAKGE 556
             AA G+
Sbjct: 765 LAAAMGK 771