Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 591 a.a., putative sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  365 bits (936), Expect = e-105
 Identities = 225/591 (38%), Positives = 325/591 (54%), Gaps = 34/591 (5%)

Query: 8   SHVNWLVNSWQRSEQAGLTQQSRAQDI----RLSDNKLKERRQELAGLIDTVSRFALPLF 63
           +H   +  SW R    GL Q   A D     R   + L ERRQ L  L        LP +
Sbjct: 16  THTQLIQASWDRCRAHGL-QPQHAPDFDCLSRAELSALLERRQNLLRL---TREEVLPHY 71

Query: 64  YQLFAHSDSRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIE 123
             L  ++   ++L D  G ++ SWG  RF E       S+GA W E   GTNA+GT LI 
Sbjct: 72  AHLLGNASYLVMLADASGCLLDSWGSRRFIEPRQHHGFSAGAHWHERGVGTNALGTTLIC 131

Query: 124 QKPISVIGEQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQL 183
            + + V  ++HF++ + ++S +A+P+FD   QL+G LD+ S+       T  +V+ M Q 
Sbjct: 132 AEAVHVGQDEHFLRQNRYMSSAAAPLFDAARQLVGALDVASDGYLPASQTLGLVRMMGQS 191

Query: 184 VENQL-LNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQGRVIG 242
           +EN+L L +    H ++        L S W G+++ DE GQ+LA N  A  LL     + 
Sbjct: 192 LENRLILAEHADQHAQLIFNSASDNLDSPWAGLLVFDERGQVLAANHRADSLLGVNP-LQ 250

Query: 243 QSVEQVL----------PRPQTHASFIYTTTPLHSKQHRTRALTPASDLHFGDAEVERCW 292
           Q++EQ+           PR Q  A         H + H  R  T   +    +  +E+  
Sbjct: 251 QNIEQLFQLPLQQLLSHPRQQPFALQATGRNRFHCQWHPPRETTRRPEAGSAEPRLEKAL 310

Query: 293 QQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFG 352
            QA  +++KDI +L+ G+TGVGK  FV ALH+ S R   PLVAVNC A+  ELVE+ELFG
Sbjct: 311 IQAGLLLEKDIPVLVEGETGVGKEVFVDALHRASSRARQPLVAVNCAAIPAELVESELFG 370

Query: 353 YVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHAT 412
           Y  GAFTGA HKG  G +R AD GILFLDEI D+PL  Q+RLL VLQ +++ P+GS    
Sbjct: 371 YDKGAFTGAHHKGNPGLIRKADHGILFLDEIGDMPLPTQARLLRVLQSRSIQPLGSGEPV 430

Query: 413 KVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALIHHIHRRYSD 472
            VDI++++A+++NL   V  G FRQDLYYR++ L + LP  ++R DR+ LI  +H RY +
Sbjct: 431 PVDIRVVSASNRNLADEVRAGRFRQDLYYRIAGLTLVLPPLRERADRRQLIEQVHARYRE 490

Query: 473 AGQ--QICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHA 530
            GQ  ++   ++     + WPGNLREL S+++VA  +A   G +   HLP     +    
Sbjct: 491 PGQPARLPPAIIDLFDQHPWPGNLRELVSVLQVALALA-ANGPVGVEHLPAGFLAESKTP 549

Query: 531 APTATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLK 581
            P ATE   + D++S VE +         GN+S  +R LG+SR T+Y++L+
Sbjct: 550 VPIATE---ETDLQSLVEQA--------NGNLSAVARRLGISRTTLYKRLR 589