Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 627 a.a., transcriptional regulator from Agrobacterium fabrum C58

 Score =  279 bits (713), Expect = 3e-79
 Identities = 194/616 (31%), Positives = 314/616 (50%), Gaps = 56/616 (9%)

Query: 13  LVNSWQRSEQAGLTQQSRAQD-IRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSD 71
           ++ SW+R         ++A++ + +S+ +L+E RQ+   L+  ++R  L   Y+  A  +
Sbjct: 25  VLESWRRCLDTYQLDPTKAREAVIVSETRLREHRQQAEDLLH-IARSGLERLYRQVAEQN 83

Query: 72  SRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIG 131
             L+L+D+ GV +   G   F   L +  L  G+ W EP  GT A+G  +   + +++  
Sbjct: 84  YVLLLSDRQGVTVEFLGDPSFNNNLRKAGLYLGSEWSEPRAGTCAVGACIATGESLTIHQ 143

Query: 132 EQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVENQLLNQ 191
             HF   H  +SC+A+PI+D  G L  VLDI+        ++Q + +++V     ++   
Sbjct: 144 TDHFDVTHTPLSCTAAPIYDTQGALTAVLDISLLSSPILKTSQNMARHLVSSTVRRIELA 203

Query: 192 IPHGHVRIDL----ACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQGR-------- 239
                 R DL    A  P  L    +  +  D SG+I      A +LLA  R        
Sbjct: 204 NLMASSRHDLVLRFAGAPEFLDVDPEAALSVDGSGRITGMTHAAARLLAASRGLDWRMPE 263

Query: 240 -VIGQSVEQVLPR-------------PQTHASFIYTTTPLHSK----QHRTRALT----- 276
            ++GQ VE+                 PQ     +   T L++     Q R  ++      
Sbjct: 264 RLLGQRVEEFFEAGLDELASLTRSSLPQDRRIVVRDGTVLYAHAIEPQQRRSSVPLARSK 323

Query: 277 --PASDLHFGDAE-VERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPL 333
             P ++   GD   V    ++  ++    + +L+ GQTG GK    + +H ++   +G  
Sbjct: 324 PQPVTERIGGDGPAVRNLRRKVEKLSPARLPILLQGQTGTGKEHLARIIH-DASGVSGRF 382

Query: 334 VAVNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSR 393
           VAVNC A+ ++L+E+ELFGY+ GAFTGA  KG +G V  A  G LFLDEI D+P  AQSR
Sbjct: 383 VAVNCAAIPEQLIESELFGYLPGAFTGALAKGRKGLVEEAQGGTLFLDEIGDMPFAAQSR 442

Query: 394 LLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSF 453
           LL VL +  VLPVG +   KVD ++I+A+H+ L  +V  G FR+DLYYRL+  V+ LP+ 
Sbjct: 443 LLRVLAEGEVLPVGGSTPQKVDFRVISASHRPLNDMVRTGAFREDLYYRLNAAVLTLPAL 502

Query: 454 QQRQDRQALIHHIHRRYSDAGQQICGDLMQRLLAYH--WPGNLRELDSLIKVASLMAEGE 511
            +R D   L+  I  ++   G+ +      RL   H  WPGN+RELD+ I  A+ + + +
Sbjct: 503 SERDDFPWLLDRILEKHGMPGRPLTLSNAARLTILHHRWPGNIRELDNAIAFAAALCD-D 561

Query: 512 GVLTFNHLPTHLAQKLSHAAPTATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGL 571
           G++T   LP    ++L+ A+ T   D +  D+++ +         A  GNIS+ +R LG+
Sbjct: 562 GLITVEDLP----EQLTPASSTPMIDSRGTDLRALL--------AACNGNISEAARRLGV 609

Query: 572 SRNTIYRKLKALGILK 587
            R T++R+++ LGI K
Sbjct: 610 DRTTLHRRMRRLGIGK 625