Pairwise Alignments

Query, 331 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., Oligopeptide ABC transporter, ATP-binding protein OppD (TC 3.A.1.5.1) from Variovorax sp. SCN45

 Score =  201 bits (510), Expect = 3e-56
 Identities = 116/322 (36%), Positives = 181/322 (56%), Gaps = 10/322 (3%)

Query: 2   PLLDIRHLTIEIDTPQGLVKAVDRMSLTMNEGEIRGLVGESGSGKSLVAKAIVGICKENW 61
           PLL++ +L     T  G+V++VD +S T+  G   G+VGESG GKS+ A +I+ +     
Sbjct: 15  PLLEVDNLRTHFHTLAGVVRSVDGVSYTVRAGRTLGVVGESGCGKSVTALSILRLVPTPP 74

Query: 62  RVTADRMRLGNIDLLQLTPRERRRVIARDVAMIFQEPSTCLDPSEEVGRQLIESIPFRTF 121
                 +RL   DL+QL+ RE R++    ++MIFQEP T L+P   VGRQ+ E++     
Sbjct: 75  GRHMGAVRLRGTDLMQLSEREMRQIRGNRISMIFQEPMTSLNPVLTVGRQIAETVQLHQK 134

Query: 122 EGRWWERFTWRKKQAIALLHKVGIKDHKDIMSSYPYELTDGECQKVMIAMAIAAKPKLLI 181
             R         K+A+ +L  V I + +  ++ YP++L+ G  Q+VMIA+A+A  P++LI
Sbjct: 135 ASR-----ADALKRAVEMLRVVQIPEPERRVNEYPHQLSGGMRQRVMIALALACNPEVLI 189

Query: 182 ADEPTNDVDPITQSQILRLLSRMNQVNNTSILLIGHDLTTITQWADRITVMYCGQSVESA 241
           ADEPT  +D   Q+QIL L+ R+ +     +++I HDL  + +  DR+ VMY G+ VE A
Sbjct: 190 ADEPTTALDVTIQAQILDLIKRLQKELGMGVVMITHDLGVVAESCDRVVVMYAGRKVEEA 249

Query: 242 ETAKIVAEPKHPYTAALLKAMPDFSDWIPHKQKLQSLPGSIPPLQHLPIGCRLGPRCPYA 301
           +   +   P HPYT AL+ +MP  +       +L  +PG +P    L  GC    RC +A
Sbjct: 250 DVIDLFDRPLHPYTRALMASMPAMN---TASTRLTEIPGLVPAAHELGRGCAFAARCSHA 306

Query: 302 QRQC-VEVPH-SRWVKNHKFSC 321
           + +C  E P  +R   +H  +C
Sbjct: 307 RARCRAEAPQLTRQGGDHVVAC 328