Pairwise Alignments

Query, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  274 bits (700), Expect = 7e-78
 Identities = 172/541 (31%), Positives = 289/541 (53%), Gaps = 8/541 (1%)

Query: 4   LENIKVSYKLAAIVIVGIVGFLSLLFISANALKENLVAEREARLKAVIQSTLSQVAYLN- 62
           L N  +S ++  ++++ +V  L +   +   +   LV E+EARL A+    +S +     
Sbjct: 14  LRNYNISRRIWVMLLLSLVATLLMFVFALRNMDTVLVQEKEARLNALTDIAISIITDFQG 73

Query: 63  --QTLPKEQAQEQAKAL--INALRFDGNNYMFVIDESRYTVVHPIRQDLVGQQMGNPGKD 118
             Q+    +A  +AKAL  ++ LR+ G  Y F ID     + HP  + LV   +      
Sbjct: 74  KAQSGELSEADAKAKALSALDNLRYSGKEYYFTIDRQGMMIQHPFAKKLVDTNVLGMADP 133

Query: 119 TEGQFWFTMIDLARNGQQGSLIYPWKNQQGN-PADKLSFVNGFAPWGWILGSGMLLDDIE 177
              + +  MI L +N     + Y W     + P+ K+S V  F+ WGWI+G+G+ +DDI 
Sbjct: 134 NGVKLFAEMIRLTQNSDSALVNYMWNQPDADAPSPKMSVVKRFSEWGWIVGTGIYVDDIA 193

Query: 178 HAVYQQFLRMGFATLIVTLVMIGLGVVISRAVIQPLDTIKDVMKKVAQGD--LTAQIPVL 235
               +   +     L+V   ++ L ++ISR+V +PL       K +A+G+  LT ++   
Sbjct: 194 AQKQEFTWQYLLVFLLVWGPVMALLLMISRSVTEPLQRTLMAFKNIAEGEANLTLRLEER 253

Query: 236 GKDELGIVAQRINNSIAAVHDALVESVQSASSVAEAAIRIASSAEETSQAVVSQRDQLSQ 295
           G+DEL  V+   N  +  +   ++    S     + +  +++ A + + A  S + +   
Sbjct: 254 GRDELSQVSVYFNAFVGRIQSLVISVRDSVDHSRQLSSSLSNVAHQAAHATNSMQQETQS 313

Query: 296 LATAMNQMTATVADVAGHAEDTARDTLDASKEANLGDKDVHSSVDSIRALSVELGVATDQ 355
           +A A+NQM+AT ++VA +A+  A+   +A  +A+  +  V  ++ ++R LS EL   ++ 
Sbjct: 314 VAAAINQMSATASEVAANAQLAAKSAKNADSQADSTNLVVTHAMGNVRQLSSELEETSEI 373

Query: 356 VNKLKEGVMQISEVTSVISGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRT 415
              LK    +I ++  VI GI+EQTNLLALNAAIEAARAG+ GRGFAVVADEVR LASRT
Sbjct: 374 AKALKVSSGEIGQILDVIVGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRTLASRT 433

Query: 416 HHSTDEIQTMINRLQQLAVSTASAMQKSQALAANSVATAENAGSDLSLIVNHIQHVSDKA 475
             ST EI  +I  ++       +++ +++  + N+V         L LI   I  ++D  
Sbjct: 434 QQSTQEINAIIEAIRGAVDKVNASVARARQQSDNTVDETAQVMDALGLIKQAIGQINDMN 493

Query: 476 TQIATAAEEQSAVAEEMNRNVSGINDAALEMSQAATYLAEESEKLADLSRQLDQKLTAFK 535
            QIATA +EQSAV  E+N N++ IN+ ++E    +  +   S+++A+ SRQ+ Q +  FK
Sbjct: 494 LQIATATDEQSAVIAELNENINRINEISVENLSKSETVGHTSDRIAEDSRQMAQLIAVFK 553

Query: 536 L 536
           +
Sbjct: 554 V 554