Pairwise Alignments

Query, 340 a.a., 16S rRNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., Ribosomal RNA small subunit methyltransferase C from Azospirillum sp. SherDot2

 Score = 97.1 bits (240), Expect = 6e-25
 Identities = 69/266 (25%), Positives = 121/266 (45%), Gaps = 13/266 (4%)

Query: 78  DLILLYWPKAKQEAEYLLAMLLAKLGTGTEIVVVGENRSGVKSIEKMFAAYGPIHKYDSA 137
           D  +L  P+     E  L  L ++L  G  + + G N  GV S  K     G   + ++ 
Sbjct: 76  DGAVLRLPRGWAGFEMALHALASRLAPGAPLWIAGGNDEGVTSAAKHLD--GLTEEPETL 133

Query: 138 ---RRCSFYWGHCVHTPAAFDIEQWFKSYAVDYQGHELTIRSLPGVFSHGEFDLGSRLLL 194
              RR           PA   +E W ++  +      L + S PG+F+HG  D G+  LL
Sbjct: 134 IIKRRARLLLTQRTDAPAKGALEDWRQTVTLTLPDRTLELVSYPGLFAHGHLDAGTECLL 193

Query: 195 DTLPPLSG--KVIDIGSGAGVLGCVMAKLNPHIELEMTDISALAIRSSQETLVANQLHGH 252
             LP ++   +V+D G GAGV+   + +  P   L + DI A+A+ ++++ +   +L   
Sbjct: 194 KVLPEVAAGTRVLDFGCGAGVIARAVRERQPDAPLTLLDIDAVALHAARQNVPDAEL--- 250

Query: 253 VYPSDMFSDTG--HHYNYIVTNPPFHSGLETSYSATERLLAESVDHLASGGSIWVVANSF 310
              SD  +  G    +  I++NPP H G +  +   + L+A +  +L   G++  V    
Sbjct: 251 -VLSDGLAGLGTRERFGLILSNPPLHRGKDEDFGMLDALVAGTKQYLKLRGTLVAVTQRT 309

Query: 311 LKYPPILEQAFGHCDIAAKTNKFAIY 336
                + + AFGH D+  +T +F ++
Sbjct: 310 AGVGKLFKAAFGHSDMLMETTQFQVW 335