Pairwise Alignments

Query, 1129 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1274 a.a., Sensor histidine kinase RcsC from Azospirillum sp. SherDot2

 Score =  196 bits (498), Expect = 1e-53
 Identities = 144/476 (30%), Positives = 227/476 (47%), Gaps = 42/476 (8%)

Query: 418 FERMQRSIREKISLIKSQNKELESNLLIIRKQNDELQLANKLKDEFLATTSHELRTPLHG 477
           FER    I   I+  ++  +E        R++ + L   ++ K  F +  SHE RTPL  
Sbjct: 314 FERAAGHIATAITNAEAYEEE--------RRRAEMLAELDRAKTAFFSNASHEFRTPLTL 365

Query: 478 MIGIAEALISGANGPISAA---HKYQLDIIISSGQRLATLVDDLLDYHKMRYGALDIQRC 534
           M+G  E ++  +     AA    +  L+++  +GQRL  LV+ LLD  ++  G +  +  
Sbjct: 366 MLGPVEDMLQRSPAEDRAAVPVERDALELVHRNGQRLLRLVNALLDVSRIEAGRMKARFE 425

Query: 535 AVDLSSATRLVLELSHHLLGKKTL--RIINQVSEQPVWVSADPQRLEQVLYNLIGNAIKY 592
            VDL++ T  +       + +  L  RI      +PVW+  D    E+++ NLI NA KY
Sbjct: 426 PVDLAAFTAELASSFRSAMDRAGLDYRIDCPPLPEPVWIDRD--LWEKIVLNLISNAFKY 483

Query: 593 TSEGKIVISATYIDDKVRVQVVDTGQGIPAEQLEHIFEPLIQAGHDASRYRQGAGLGLSI 652
           T  G + ++   + ++  + V DTG GIPAE+   +F+   +    + R  +G G+GL++
Sbjct: 484 TLSGGVAVAVQPVGERAVLTVRDTGVGIPAEEQPRVFDRFHRIEGQSGRTHEGTGIGLAL 543

Query: 653 SRQLIELMHGTLYVSSQPMVGTTFSFTLPL----------------ASEEEIAQARLTEL 696
            + L +L  GT+ + S    G+TF+ TLP                 AS    A A + E 
Sbjct: 544 VKDLTQLHGGTVALDSDVGRGSTFTVTLPFGNAHVPATERPAGPIPASTATRADAFVAEA 603

Query: 697 PHFQAPEVLDSELP------EQSNLPENEHGPLLLVADDEPVNLRVLDSFLRLEGYRVHT 750
            H+   E  +   P           PE      +L+ADD       ++  L   GYRV T
Sbjct: 604 LHWLPQEQGEQSAPALVDGASSGPAPERMRNATILLADDNADMRSYVERLLTAAGYRVET 663

Query: 751 AQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVCEKLRQTYDHAELPIIMLTALNQSDDR 810
             DG   +E  K   P+LVL D+MMP + G+ V   LR      +LPII+L+A    +  
Sbjct: 664 VGDGVAAVETAKAAPPDLVLSDVMMPHLDGFGVIAALRGHPHTRDLPIILLSARAGEESS 723

Query: 811 VRGFEAGANDYLSKPFNKQELAARI-----VAHLTASKAELRRIENAQLQKELKHR 861
           + G +AGA+DYL KPF+ +EL AR+     +A L    AE  R  N  L++ ++ R
Sbjct: 724 IEGLQAGADDYLVKPFSARELLARVEGALRLAELRRETAEQLRQANEALERRVEER 779



 Score = 75.5 bits (184), Expect = 3e-17
 Identities = 104/412 (25%), Positives = 178/412 (43%), Gaps = 59/412 (14%)

Query: 446  IRKQNDELQLANKLK--DEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDI 503
            +RK  ++L+ + K++   +     +H+    L  M    + L+S   G     H  +++ 
Sbjct: 896  LRKTEEQLRQSQKMEAVGQLTGGMAHDFNNLLQAMSSCLQ-LVSRRVG-----HAPEVEP 949

Query: 504  IISSGQ----RLATLVDDLLDYHKMRYGALDIQRCAVDLSSATR-LVLELSHHLLGKKTL 558
            I+ +G+    R A+L+  L+ + + +     +Q  A D+      L L L   L     L
Sbjct: 950  ILDAGRQAVDRGASLIRQLMAFSRRQ----SLQPEAFDVRDRLLGLRLFLDRALRADIGL 1005

Query: 559  RIINQVSEQPVWVSADPQRLEQVLYNLIGNAIK-YTSEGKIVISATYI---------DDK 608
                Q    PV   ADP + +  + NL  NA     ++G +V+ A  +          + 
Sbjct: 1006 EFALQGGLWPVM--ADPVQFDLAVLNLATNARDAIDADGAVVVGADNVVLDGMDGLSGEF 1063

Query: 609  VRVQVVDTGQGIPAEQLEHIFEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSS 668
            ++V V D+G+GI  + L  +FEP            +G GLGL+          GT  V S
Sbjct: 1064 LKVFVRDSGRGIAPDALGRVFEPFFTT----KAVGKGTGLGLAQVYGFCRQSGGTATVES 1119

Query: 669  QPMVGTTFSFTLPLASEEEIAQARLTELPHFQAPEVLDSELPEQSNLPENEHGPLLLVAD 728
                GT  S  LP A E  +A    +E P+  AP VL S                +L+ +
Sbjct: 1120 VEGKGTVVSLLLPRA-EATVA----SETPN--APPVLPSAADIH-----------VLLVE 1161

Query: 729  DEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPG-MSGYQVCEKL 787
            D+PV   V+ + L   GYRV  A  G + L  ++    +L+  D++MPG ++G  + ++ 
Sbjct: 1162 DDPVVAPVVTAALEDLGYRVTRAATGEEALRRLEEAAVDLLFSDVVMPGSINGVALAQEA 1221

Query: 788  RQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 839
            RQ +   +L I++ T  ++     +         LSKP+  ++LA  I   L
Sbjct: 1222 RQRW--PDLGILLTTGYSEDLAATKSVRV-----LSKPYRIEDLAHAIQEEL 1266