Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., RNA polymerase sigma factor RpoH from Azospirillum sp. SherDot2

 Score =  138 bits (348), Expect = 2e-37
 Identities = 94/281 (33%), Positives = 156/281 (55%), Gaps = 18/281 (6%)

Query: 62  YLSEIGFSPLLTAEEEVLYARR-ALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDL 120
           YL EI   P+L  ++E + A+      D  A  +++ S+LRLV KI+  Y   GL L +L
Sbjct: 19  YLQEIRKFPMLEPQQEYMLAKSWQQHEDSGAAHQLVTSHLRLVAKIAMGYRGYGLPLSEL 78

Query: 121 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVV-KELNIY 179
           I EGN+G+++AV++FDP+RGFR +TYA WWIR  I+  +++    +++      K+L   
Sbjct: 79  ISEGNVGMMQAVKRFDPDRGFRLATYAMWWIRAAIQEYILHSWSLVKMGTTAAQKKLFFN 138

Query: 180 LRTARELSQRLDH-EPTPEE---IALELDRPVDDVTKM-LRLNERISSVDTPIGGDGDKA 234
           LR  +   Q ++  + +PE+   IA +LD P  DV  M  RL     S++ P+  + +  
Sbjct: 139 LRRLKGQMQAIEEGDLSPEQVHAIATKLDVPEQDVVNMNRRLASPDHSLNAPLRAESEGE 198

Query: 235 LLDILPDSHNADPEFSTQDDD----IRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLE 290
             D L D   A  E +  D +     R+ L N +  LN +++++L  R   L   P+TLE
Sbjct: 199 WQDFLVD-ETASQEITLADREELGKRRKLLANAMTALNDRERDILTER--RLREAPTTLE 255

Query: 291 EVGREINLTRERVRQIQVEGLRRLREIL----VKQGLNMEA 327
           ++ ++  ++RERVRQI+V    +L++ +    V+Q +  EA
Sbjct: 256 DLSQKYGISRERVRQIEVRAFEKLQKAIKAAAVEQKMESEA 296