Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 499 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  251 bits (640), Expect = 5e-71
 Identities = 159/422 (37%), Positives = 231/422 (54%), Gaps = 19/422 (4%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           FAD GL  +V+  +   G+   TPIQ  A+P  L  +DI G AQTGTGKT +F+      
Sbjct: 4   FADLGLSQKVLSAVTDAGYTIPTPIQVGAIPPALQRRDILGIAQTGTGKTASFVLP---- 59

Query: 71  LLTTPAAEGRAETQ-PRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
            + T   +GRA  + PR +I+ PTRELA Q+  + +    +  L  AL  GG S+D+Q  
Sbjct: 60  -MLTLLEKGRARARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDR 118

Query: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189
           KL+ G D+LI T GR++D  ++    +  ++ +V+DEADRM D+GFI DI  + + +P  
Sbjct: 119 KLERGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFT 178

Query: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELF--YPSNEHKMALL 247
           +  L   FSAT+   +Q+LA   + NPE + V     T   + +     +  +  K A+L
Sbjct: 179 RQTL--FFSATMPPEIQKLADRFLQNPERLEVARRSSTAITVTQRFVAAHGKDYEKRAVL 236

Query: 248 QTLIE-EEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGD 306
           + LI  +E    AIIF N K    +++  L      VG L GD+ Q+ R  +L  F  G+
Sbjct: 237 RELIRSQEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGN 296

Query: 307 VDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAI 366
           + +LVA+DVAARGL IP V+HVFN+D+P   EDYVHRIGRTGRAG SG + +   +    
Sbjct: 297 IKLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFTIVTKRETK 356

Query: 367 NLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGG----NR 422
              AIE  I   +   + D    L++LP P+    S + R ++    R     G    +R
Sbjct: 357 FSDAIEKLIGQKVEWFNGD----LSELPEPMESHDSRRDRGSDGRKDRKRERPGKVHADR 412

Query: 423 KP 424
           KP
Sbjct: 413 KP 414