Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., peptide transporter from Pseudomonas fluorescens FW300-N2C3

 Score =  216 bits (550), Expect = 5e-61
 Identities = 116/308 (37%), Positives = 183/308 (59%), Gaps = 14/308 (4%)

Query: 2   SAVSIAPSRWERFKQSDFLYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSID 61
           +AV++  S        +F + F R+K A++     +L V  A+ AP +AP +P +     
Sbjct: 6   TAVAVDQSLLYPSPYKEFWHAFSRNKGAVAGLLFMILVVFCALFAPWVAPHDPSEQYRDF 65

Query: 62  IMDAELPPSWMEGGNEHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGL 121
           ++    PP+W+EGG   FLLGTDE GRD+ S ++ GSRLSL IG  +V + L  GI++GL
Sbjct: 66  LLT---PPAWLEGGQIQFLLGTDELGRDLLSRLIQGSRLSLLIGLSSVVMSLIPGILLGL 122

Query: 122 SAGYFGGRIDSFLMRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVA 181
            AG+F   +   +MR  DI L+  ++++A+ + AI              ++  V+ I + 
Sbjct: 123 FAGFFPRILGPTIMRLMDIMLALPSLLLAVAIVAILGPG----------LINTVIAIAIV 172

Query: 182 EWPQYARTVRASVLAEKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAI 241
             P Y R  RA+V+ E  ++YV AAR+ G   PR+MF  +LPNC++P++V +T+  ++AI
Sbjct: 173 SLPSYVRLTRAAVMGELNRDYVTAARLAGAGLPRLMFITVLPNCMAPLIVQATLSFSSAI 232

Query: 242 MSEAALSFLGLGLPVDQPSLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWL 301
           +  AAL FLGLG+    P  G++++    YI   AWW+ + PG+ ++L VL INL+GD L
Sbjct: 233 LDAAALGFLGLGVQPPTPEWGTMLASARDYI-ERAWWVVSLPGLTILLSVLAINLMGDGL 291

Query: 302 RDVFNPKI 309
           RD  +PK+
Sbjct: 292 RDALDPKL 299